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This page was generated on 2022-01-14 13:07:17 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TBSignatureProfiler on tokay2


To the developers/maintainers of the TBSignatureProfiler package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TBSignatureProfiler.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1935/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TBSignatureProfiler 1.6.0  (landing page)
Aubrey Odom
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/TBSignatureProfiler
git_branch: RELEASE_3_14
git_last_commit: fe6bf5e
git_last_commit_date: 2021-10-26 12:59:18 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TBSignatureProfiler
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TBSignatureProfiler_1.6.0.tar.gz && rm -rf TBSignatureProfiler.buildbin-libdir && mkdir TBSignatureProfiler.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TBSignatureProfiler.buildbin-libdir TBSignatureProfiler_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TBSignatureProfiler_1.6.0.zip && rm TBSignatureProfiler_1.6.0.tar.gz TBSignatureProfiler_1.6.0.zip
StartedAt: 2022-01-13 06:33:08 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 06:34:30 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 82.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TBSignatureProfiler_1.6.0.tar.gz && rm -rf TBSignatureProfiler.buildbin-libdir && mkdir TBSignatureProfiler.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TBSignatureProfiler.buildbin-libdir TBSignatureProfiler_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TBSignatureProfiler_1.6.0.zip && rm TBSignatureProfiler_1.6.0.tar.gz TBSignatureProfiler_1.6.0.zip
###
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##############################################################################


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install for i386

* installing *source* package 'TBSignatureProfiler' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TBSignatureProfiler'
    finding HTML links ... done
    Bootstrap_LOOCV_LR_AUC                  html  
    COVIDsignatures                         html  
    LOOAUC_simple_multiple_noplot_one_df    html  
    ObtainSampleScore_OriginalModel         html  
    OriginalTrainingData                    html  
    SignatureQuantitative                   html  
    SulimanOriginalModel                    html  
    TBSPapp                                 html  
    TB_hiv                                  html  
    TB_indian                               html  
    TBcommon                                html  
    TBsignatures                            html  
    TBsignaturesSplit                       html  
    addTBsignature                          html  
    bootstrapAUC                            html  
    common_sigAnnotData                     html  
    compareAlgs                             html  
    compareBoxplots                         html  
    cv_glmnet_OriginalModel                 html  
    deseq2_norm_rle                         html  
    distinctColors                          html  
    dot-OriginalModel_NoRetraining          html  
    dot-OriginalModel_Retraining            html  
    evaluateOriginalModel                   html  
    knn_OriginalModel                       html  
    lda_OriginalModel                       html  
    mkAssay                                 html  
    plotQuantitative                        html  
    randomForest_OriginalModel              html  
    ref_combat_impute                       html  
    runTBsigProfiler                        html  
    sigAnnotData                            html  
    signatureBoxplot                        html  
    signatureGeneHeatmap                    html  
    signatureHeatmap                        html  
    signatureROCplot                        html  
    signatureROCplot_CI                     html  
    subsetGeneSet                           html  
    svm_OriginalModel                       html  
    tableAUC                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TBSignatureProfiler' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TBSignatureProfiler' as TBSignatureProfiler_1.6.0.zip
* DONE (TBSignatureProfiler)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TBSignatureProfiler' successfully unpacked and MD5 sums checked