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This page was generated on 2022-01-21 13:08:13 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for OUTRIDER on machv2


To the developers/maintainers of the OUTRIDER package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OUTRIDER.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1356/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OUTRIDER 1.12.0  (landing page)
Christian Mertes
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/OUTRIDER
git_branch: RELEASE_3_14
git_last_commit: 2aa8599
git_last_commit_date: 2021-10-26 12:45:42 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: OUTRIDER
Version: 1.12.0
Command: rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OUTRIDER_1.12.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OUTRIDER.buildbin-libdir
StartedAt: 2022-01-20 20:44:56 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 20:46:41 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 104.8 seconds
RetCode: 0
Status:   OK  
PackageFile: OUTRIDER_1.12.0.tgz
PackageFileSize: 2.433 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf OUTRIDER.buildbin-libdir && mkdir OUTRIDER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OUTRIDER_1.12.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R OUTRIDER.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OUTRIDER.buildbin-libdir OUTRIDER_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘OUTRIDER’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o OUTRIDER.so RcppExports.o loss_n_gradient_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/OUTRIDER.buildbin-libdir/00LOCK-OUTRIDER/00new/OUTRIDER/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OUTRIDER)


>>>>>>> 
>>>>>>> FIXING LINKS FOR OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "OUTRIDER.buildbin-libdir/OUTRIDER/libs/OUTRIDER.so"