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This page was generated on 2021-12-06 13:05:05 -0500 (Mon, 06 Dec 2021).

INSTALL results for NxtIRFcore on nebbiolo2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NxtIRFcore.git to
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raw results

Package 1312/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NxtIRFcore 1.0.0  (landing page)
Alex Chit Hei Wong
Snapshot Date: 2021-12-05 01:55:05 -0500 (Sun, 05 Dec 2021)
git_url: https://git.bioconductor.org/packages/NxtIRFcore
git_branch: RELEASE_3_14
git_last_commit: 933ccae
git_last_commit_date: 2021-10-26 13:13:51 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NxtIRFcore
Version: 1.0.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL NxtIRFcore
StartedAt: 2021-12-05 03:39:00 -0500 (Sun, 05 Dec 2021)
EndedAt: 2021-12-05 03:40:33 -0500 (Sun, 05 Dec 2021)
EllapsedTime: 93.4 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL NxtIRFcore
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘NxtIRFcore’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c BAM2blocks.cpp -o BAM2blocks.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c FastaReader.cpp -o FastaReader.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c FragmentBlocks.cpp -o FragmentBlocks.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c GZTools.cpp -o GZTools.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c IRFinder.cpp -o IRFinder.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I/usr/local/include  -fopenmp -DRNXTIRF -fpic  -g -O2  -Wall -c covTools.cpp -o covTools.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o NxtIRFcore.so BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-NxtIRFcore/00new/NxtIRFcore/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NxtIRFcore)