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This page was generated on 2021-09-18 12:06:14 -0400 (Sat, 18 Sep 2021).

CHECK results for MoonlightR on riesling1

To the developers/maintainers of the MoonlightR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MoonlightR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1169/2029HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MoonlightR 1.19.0  (landing page)
Antonio Colaprico
Snapshot Date: 2021-09-17 14:50:09 -0400 (Fri, 17 Sep 2021)
git_url: https://git.bioconductor.org/packages/MoonlightR
git_branch: master
git_last_commit: 0af3ca9
git_last_commit_date: 2021-05-19 12:23:48 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MoonlightR
Version: 1.19.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MoonlightR.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MoonlightR_1.19.0.tar.gz
StartedAt: 2021-09-18 01:54:06 -0400 (Sat, 18 Sep 2021)
EndedAt: 2021-09-18 02:01:57 -0400 (Sat, 18 Sep 2021)
EllapsedTime: 470.5 seconds
RetCode: 0
Status:   OK  
CheckDir: MoonlightR.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MoonlightR.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MoonlightR_1.19.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/MoonlightR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MoonlightR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MoonlightR' version '1.19.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MoonlightR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
FEA 10.45   0.07   10.53
DPA  6.58   0.16    6.74
URA  2.00   0.03   16.63
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
    user system elapsed
FEA 9.64   0.12    9.76
DPA 4.94   0.18    5.11
URA 1.79   0.03   17.64
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MoonlightR.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MoonlightR_1.19.0.tar.gz && rm -rf MoonlightR.buildbin-libdir && mkdir MoonlightR.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MoonlightR.buildbin-libdir MoonlightR_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MoonlightR_1.19.0.zip && rm MoonlightR_1.19.0.tar.gz MoonlightR_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 54 12.3M   54 6848k    0     0  7712k      0  0:00:01 --:--:--  0:00:01 7704k
100 12.3M  100 12.3M    0     0  8908k      0  0:00:01  0:00:01 --:--:-- 8914k

install for i386

* installing *source* package 'MoonlightR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MoonlightR'
    finding HTML links ... done
    DEGsmatrix                              html  
    DPA                                     html  
    DiseaseList                             html  
    EAGenes                                 html  
    FEA                                     html  
    GDCprojects                             html  
    GEO_TCGAtab                             html  
    GRN                                     html  
    GSEA                                    html  
    LPA                                     html  
    MoonlightR                              html  
    PRA                                     html  
    URA                                     html  
    dataFilt                                html  
    dataGRN                                 html  
    dataURA                                 html  
    geneInfo                                html  
    getDataGEO                              html  
    getDataTCGA                             html  
    knownDriverGenes                        html  
    listMoonlight                           html  
    moonlight                               html  
    plotCircos                              html  
    plotFEA                                 html  
    plotNetworkHive                         html  
    plotURA                                 html  
    tabGrowBlock                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MoonlightR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MoonlightR' as MoonlightR_1.19.0.zip
* DONE (MoonlightR)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'MoonlightR' successfully unpacked and MD5 sums checked

Tests output


Example timings

MoonlightR.Rcheck/examples_i386/MoonlightR-Ex.timings

nameusersystemelapsed
DPA6.580.166.74
FEA10.45 0.0710.53
GRN1.970.001.97
GSEA000
LPA0.000.020.01
PRA000
URA 2.00 0.0316.63
getDataGEO000
getDataTCGA000
moonlight4.860.145.00
plotCircos0.440.000.44
plotFEA4.760.044.81
plotNetworkHive0.080.000.08
plotURA0.060.000.06

MoonlightR.Rcheck/examples_x64/MoonlightR-Ex.timings

nameusersystemelapsed
DPA4.940.185.11
FEA9.640.129.76
GRN1.700.021.72
GSEA000
LPA000
PRA000
URA 1.79 0.0317.64
getDataGEO000
getDataTCGA000
moonlight4.330.144.47
plotCircos0.440.030.47
plotFEA4.660.034.69
plotNetworkHive0.060.000.06
plotURA0.050.000.05