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This page was generated on 2022-01-24 13:06:25 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for InPAS on tokay2


To the developers/maintainers of the InPAS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InPAS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 934/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InPAS 2.2.0  (landing page)
Jianhong Ou
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/InPAS
git_branch: RELEASE_3_14
git_last_commit: 84281b7
git_last_commit_date: 2021-10-26 12:19:22 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: InPAS
Version: 2.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/InPAS_2.2.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL InPAS_2.2.0.zip && rm InPAS_2.2.0.tar.gz InPAS_2.2.0.zip
StartedAt: 2022-01-23 07:10:44 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 07:13:53 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 188.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/InPAS_2.2.0.tar.gz && rm -rf InPAS.buildbin-libdir && mkdir InPAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InPAS.buildbin-libdir InPAS_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL InPAS_2.2.0.zip && rm InPAS_2.2.0.tar.gz InPAS_2.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1079k  100 1079k    0     0  3152k      0 --:--:-- --:--:-- --:--:-- 3157k

install for i386

* installing *source* package 'InPAS' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'InPAS'
    finding HTML links ... done
    InPAS                                   html  
    UTR3eSet-class                          html  
    finding level-2 HTML links ... done

    adjust_distalCPs                        html  
    adjust_proximalCPs                      html  
    adjust_proximalCPsByNBC                 html  
    adjust_proximalCPsByPWM                 html  
    assemble_allCov                         html  
    assign_feature                          html  
    compensation                            html  
    extract_UTR3Anno                        html  
    fft.smooth                              html  
    filter_testOut                          html  
    find_segmentationSites                  html  
    find_valley                             html  
    fix_dbLockError                         html  
    gcComp                                  html  
    gcContents                              html  
    get_PAscore                             html  
    get_PAscore2                            html  
    get_UTR3CDS                             html  
    get_UTR3TotalCov                        html  
    get_UTR3eSet                            html  
    get_UTR3region                          html  
    get_depthWeight                         html  
    get_regionCov                           html  
    get_seqLen                              html  
    get_ssRleCov                            html  
    get_totalCov                            html  
    get_usage4plot                          html  
    get_zScoreCutoff                        html  
    mapComp                                 html  
    parse_TxDb                              html  
    plot_utr3Usage                          html  
    polish_CPs                              html  
    remove_convergentUTR3s                  html  
    run_coverageQC                          html  
    run_fisherExactTest                     html  
    run_limmaAnalysis                       html  
    run_singleGroupAnalysis                 html  
    run_singleSampleAnalysis                html  
    search_CPs                              html  
    search_distalCPs                        html  
    search_proximalCPs                      html  
    setup_CPsSearch                         html  
    setup_GSEA                              html  
    setup_sqlitedb                          html  
    test_dPDUI                              html  
    trim_seqnames                           html  
    utr3.mm10                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'InPAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InPAS' as InPAS_2.2.0.zip
* DONE (InPAS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'InPAS' successfully unpacked and MD5 sums checked