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This page was generated on 2022-01-21 13:06:32 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ISAnalytics on tokay2


To the developers/maintainers of the ISAnalytics package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ISAnalytics.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 956/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ISAnalytics 1.4.3  (landing page)
Andrea Calabria
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ISAnalytics
git_branch: RELEASE_3_14
git_last_commit: 51c47b9
git_last_commit_date: 2022-01-13 08:23:28 -0500 (Thu, 13 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ISAnalytics
Version: 1.4.3
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISAnalytics_1.4.3.tar.gz && rm -rf ISAnalytics.buildbin-libdir && mkdir ISAnalytics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISAnalytics.buildbin-libdir ISAnalytics_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISAnalytics_1.4.3.zip && rm ISAnalytics_1.4.3.tar.gz ISAnalytics_1.4.3.zip
StartedAt: 2022-01-20 06:12:36 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 06:15:17 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 161.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISAnalytics_1.4.3.tar.gz && rm -rf ISAnalytics.buildbin-libdir && mkdir ISAnalytics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISAnalytics.buildbin-libdir ISAnalytics_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISAnalytics_1.4.3.zip && rm ISAnalytics_1.4.3.tar.gz ISAnalytics_1.4.3.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 2452k    4  100k    0     0   533k      0  0:00:04 --:--:--  0:00:04  533k
100 2452k  100 2452k    0     0  2674k      0 --:--:-- --:--:-- --:--:-- 2674k

install for i386

* installing *source* package 'ISAnalytics' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ISAnalytics'
    finding HTML links ... done
    CIS_grubbs                              html  
    CIS_volcano_plot                        html  
    HSC_population_plot                     html  
    HSC_population_size_estimate            html  
    ISAnalytics-deprecated                  html  
    ISAnalytics                             html  
    aggregate_metadata                      html  
    aggregate_values_by_key                 html  
    annotation_IS_vars                      html  
    annotation_issues                       html  
    as_sparse_matrix                        html  
    association_file                        html  
    association_file_columns                html  
    available_outlier_tests                 html  
    blood_lineages_default                  html  
    circos_genomic_density                  html  
    clinical_relevant_suspicious_genes      html  
    comparison_matrix                       html  
    compute_abundance                       html  
    compute_near_integrations               html  
    cumulative_count_union                  html  
    cumulative_is                           html  
    date_columns_coll                       html  
    date_formats                            html  
    default_iss_file_prefixes               html  
    default_meta_agg                        html  
    default_report_path                     html  
    default_stats                           html  
    generate_Vispa2_launch_AF               html  
    generate_blank_association_file         html  
    import_Vispa2_stats                     html  
    import_association_file                 html  
    import_parallel_Vispa2Matrices          html  
    import_parallel_Vispa2Matrices_auto     html  
    import_parallel_Vispa2Matrices_interactive
                                            html  
    import_single_Vispa2Matrix              html  
    integration_alluvial_plot               html  
    integration_matrices                    html  
    is_sharing                              html  
    iss_source                              html  
    known_clinical_oncogenes                html  
    mandatory_IS_vars                       html  
    matching_options                        html  
    outlier_filter                          html  
    outliers_by_pool_fragments              html  
    proto_oncogenes                         html  
    purity_filter                           html  
    quantification_types                    html  
    realign_after_collisions                html  
    reduced_AF_columns                      html  
    refGene_table_cols                      html  
    refGenes_hg19                           html  
    remove_collisions                       html  
    sample_statistics                       html  
    separate_quant_matrices                 html  
    sharing_heatmap                         html  
    sharing_venn                            html  
    threshold_filter                        html  
    top_abund_tableGrob                     html  
    top_integrations                        html  
    unzip_file_system                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ISAnalytics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ISAnalytics' as ISAnalytics_1.4.3.zip
* DONE (ISAnalytics)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ISAnalytics' successfully unpacked and MD5 sums checked