Back to Multiple platform build/check report for BioC 3.14
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-19 13:06:39 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GenomicFeatures on tokay2


To the developers/maintainers of the GenomicFeatures package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicFeatures.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 751/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.46.3  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/GenomicFeatures
git_branch: RELEASE_3_14
git_last_commit: b646ba6
git_last_commit_date: 2021-12-23 11:51:00 -0500 (Thu, 23 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: GenomicFeatures
Version: 1.46.3
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicFeatures_1.46.3.tar.gz && rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.46.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.46.3.zip && rm GenomicFeatures_1.46.3.tar.gz GenomicFeatures_1.46.3.zip
StartedAt: 2022-01-18 06:36:27 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 06:39:21 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 174.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicFeatures_1.46.3.tar.gz && rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.46.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.46.3.zip && rm GenomicFeatures_1.46.3.tar.gz GenomicFeatures_1.46.3.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 1132k    3 36475    0     0   428k      0  0:00:02 --:--:--  0:00:02  429k
100 1132k  100 1132k    0     0  2911k      0 --:--:-- --:--:-- --:--:-- 2911k

install for i386

* installing *source* package 'GenomicFeatures' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicFeatures'
    finding HTML links ... done
    FeatureDb-class                         html  
    finding level-2 HTML links ... done

    TxDb-class                              html  
    as-format-methods                       html  
    coordinate-mapping-methods              html  
    coverageByTranscript                    html  
    disjointExons                           html  
    exonicParts                             html  
    extractTranscriptSeqs                   html  
    extractUpstreamSeqs                     html  
    features                                html  
    getPromoterSeq-methods                  html  
    id2name                                 html  
    makeFeatureDbFromUCSC                   html  
    makeTxDb                                html  
    makeTxDbFromBiomart                     html  
    makeTxDbFromEnsembl                     html  
    makeTxDbFromGFF                         html  
    makeTxDbFromGRanges                     html  
    makeTxDbFromUCSC                        html  
    makeTxDbPackage                         html  
    mapIdsToRanges                          html  
    mapRangesToIds                          html  
    microRNAs                               html  
    nearest-methods                         html  
    select-methods                          html  
    transcriptLengths                       html  
    transcriptLocs2refLocs                  html  
    transcripts                             html  
    transcriptsBy                           html  
    transcriptsByOverlaps                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicFeatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicFeatures' as GenomicFeatures_1.46.3.zip
* DONE (GenomicFeatures)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GenomicFeatures' successfully unpacked and MD5 sums checked