Back to Multiple platform build/check report for BioC 3.14
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-21 13:06:22 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GDCRNATools on tokay2


To the developers/maintainers of the GDCRNATools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GDCRNATools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 709/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GDCRNATools 1.14.0  (landing page)
Ruidong Li
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/GDCRNATools
git_branch: RELEASE_3_14
git_last_commit: 9b69c00
git_last_commit_date: 2021-10-26 12:41:09 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GDCRNATools
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GDCRNATools_1.14.0.tar.gz && rm -rf GDCRNATools.buildbin-libdir && mkdir GDCRNATools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GDCRNATools.buildbin-libdir GDCRNATools_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GDCRNATools_1.14.0.zip && rm GDCRNATools_1.14.0.tar.gz GDCRNATools_1.14.0.zip
StartedAt: 2022-01-20 07:20:24 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 07:23:11 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 167.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GDCRNATools_1.14.0.tar.gz && rm -rf GDCRNATools.buildbin-libdir && mkdir GDCRNATools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GDCRNATools.buildbin-libdir GDCRNATools_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GDCRNATools_1.14.0.zip && rm GDCRNATools_1.14.0.tar.gz GDCRNATools_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 60 3963k   60 2407k    0     0  3237k      0  0:00:01 --:--:--  0:00:01 3235k
100 3963k  100 3963k    0     0  3698k      0  0:00:01  0:00:01 --:--:-- 3701k

install for i386

* installing *source* package 'GDCRNATools' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GDCRNATools'
    finding HTML links ... done
    DEGAll                                  html  
    GDCRNATools-package                     html  
    enrichOutput                            html  
    gdcBarPlot                              html  
    gdcCEAnalysis                           html  
    gdcClinicalDownload                     html  
    gdcClinicalMerge                        html  
    gdcCorPlot                              html  
    gdcDEAnalysis                           html  
    gdcDEReport                             html  
    gdcEnrichAnalysis                       html  
    gdcEnrichPlot                           html  
    gdcExportNetwork                        html  
    gdcFilterDuplicate                      html  
    gdcFilterSampleType                     html  
    gdcHeatmap                              html  
    gdcKMPlot                               html  
    gdcMatchSamples                         html  
    gdcParseMetadata                        html  
    gdcRNADownload                          html  
    gdcRNAMerge                             html  
    gdcSurvivalAnalysis                     html  
    gdcVolcanoPlot                          html  
    gdcVoomNormalization                    html  
    lncTarget                               html  
    mirCounts                               html  
    pcTarget                                html  
    rnaCounts                               html  
    shinyCorPlot                            html  
    shinyKMPlot                             html  
    shinyPathview                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GDCRNATools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GDCRNATools' as GDCRNATools_1.14.0.zip
* DONE (GDCRNATools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GDCRNATools' successfully unpacked and MD5 sums checked