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This page was generated on 2021-12-03 13:05:47 -0500 (Fri, 03 Dec 2021).

BUILD BIN results for FRASER on machv2

To the developers/maintainers of the FRASER package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FRASER.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 683/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FRASER 1.6.0  (landing page)
Christian Mertes
Snapshot Date: 2021-12-02 01:55:06 -0500 (Thu, 02 Dec 2021)
git_url: https://git.bioconductor.org/packages/FRASER
git_branch: RELEASE_3_14
git_last_commit: fa070e3
git_last_commit_date: 2021-10-26 12:59:14 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FRASER
Version: 1.6.0
Command: rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FRASER_1.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FRASER.buildbin-libdir
StartedAt: 2021-12-02 22:07:42 -0500 (Thu, 02 Dec 2021)
EndedAt: 2021-12-02 22:10:08 -0500 (Thu, 02 Dec 2021)
EllapsedTime: 145.9 seconds
RetCode: 0
Status:   OK  
PackageFile: FRASER_1.6.0.tgz
PackageFileSize: 2.944 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FRASER_1.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FRASER.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FRASER.buildbin-libdir FRASER_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FRASER’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_OPENMP -fPIC  -Wall -g -O2  -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FRASER.so RcppExports.o loss_n_gradient_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/FRASER.buildbin-libdir/00LOCK-FRASER/00new/FRASER/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FRASER)


>>>>>>> 
>>>>>>> FIXING LINKS FOR FRASER.buildbin-libdir/FRASER/libs/FRASER.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"