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This page was generated on 2022-01-26 13:06:29 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for DMCHMM on tokay2


To the developers/maintainers of the DMCHMM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DMCHMM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 524/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DMCHMM 1.16.0  (landing page)
Farhad Shokoohi
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/DMCHMM
git_branch: RELEASE_3_14
git_last_commit: efaf39a
git_last_commit_date: 2021-10-26 12:37:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: DMCHMM
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMCHMM_1.16.0.tar.gz && rm -rf DMCHMM.buildbin-libdir && mkdir DMCHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMCHMM.buildbin-libdir DMCHMM_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMCHMM_1.16.0.zip && rm DMCHMM_1.16.0.tar.gz DMCHMM_1.16.0.zip
StartedAt: 2022-01-25 06:12:19 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 06:13:51 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 92.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMCHMM_1.16.0.tar.gz && rm -rf DMCHMM.buildbin-libdir && mkdir DMCHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMCHMM.buildbin-libdir DMCHMM_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMCHMM_1.16.0.zip && rm DMCHMM_1.16.0.tar.gz DMCHMM_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  756k  100  756k    0     0  1286k      0 --:--:-- --:--:-- --:--:-- 1289k

install for i386

* installing *source* package 'DMCHMM' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** help
*** installing help indices
  converting help for package 'DMCHMM'
    finding HTML links ... done
    BSDMCs-class                            html  
    BSData-class                            html  
    finding level-2 HTML links ... done

    DMCHMM-package                          html  
    cBSDMCs-method                          html  
    cBSData-method                          html  
    combine-method                          html  
    data                                    html  
    findDMCs-method                         html  
    manhattanDMCs-method                    html  
    methHMEM-method                         html  
    methHMMCMC-method                       html  
    methLevels-method                       html  
    methReads-method                        html  
    methStates-method                       html  
    methVars-method                         html  
    params                                  html  
    qqDMCs-method                           html  
    readBismark-method                      html  
    totalReads-method                       html  
    writeBED-method                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DMCHMM' ...
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
* MD5 sums
packaged installation of 'DMCHMM' as DMCHMM_1.16.0.zip
* DONE (DMCHMM)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DMCHMM' successfully unpacked and MD5 sums checked