Back to Multiple platform build/check report for BioC 3.14
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-24 13:07:30 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for DEComplexDisease on machv2


To the developers/maintainers of the DEComplexDisease package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEComplexDisease.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 463/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEComplexDisease 1.14.0  (landing page)
Guofeng Meng
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/DEComplexDisease
git_branch: RELEASE_3_14
git_last_commit: 67836f3
git_last_commit_date: 2021-10-26 12:41:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DEComplexDisease
Version: 1.14.0
Command: rm -rf DEComplexDisease.buildbin-libdir && mkdir DEComplexDisease.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DEComplexDisease_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DEComplexDisease.buildbin-libdir
StartedAt: 2022-01-23 20:13:40 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 20:14:55 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 75.1 seconds
RetCode: 0
Status:   OK  
PackageFile: DEComplexDisease_1.14.0.tgz
PackageFileSize: 1.709 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DEComplexDisease.buildbin-libdir && mkdir DEComplexDisease.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DEComplexDisease_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DEComplexDisease.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DEComplexDisease.buildbin-libdir DEComplexDisease_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘DEComplexDisease’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c sig.cpp -o sig.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DEComplexDisease.so RcppExports.o sig.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/DEComplexDisease.buildbin-libdir/00LOCK-DEComplexDisease/00new/DEComplexDisease/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DEComplexDisease)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/DEComplexDisease.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/DEComplexDisease.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/DEComplexDisease.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/DEComplexDisease.so"