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This page was generated on 2021-11-29 15:05:51 -0500 (Mon, 29 Nov 2021).

BUILD BIN results for CytoTree on machv2

To the developers/maintainers of the CytoTree package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CytoTree.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 444/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CytoTree 1.4.0  (landing page)
Yuting Dai
Snapshot Date: 2021-11-28 04:15:06 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/CytoTree
git_branch: RELEASE_3_14
git_last_commit: c190c92
git_last_commit_date: 2021-10-26 13:00:49 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'destiny' which is not available
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'destiny' which is not available

Summary

Package: CytoTree
Version: 1.4.0
Command: rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CytoTree_1.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CytoTree.buildbin-libdir
StartedAt: 2021-11-28 23:38:53 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 23:39:55 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:   OK  
PackageFile: CytoTree_1.4.0.tgz
PackageFileSize: 4.243 MiB

Command output

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###
### Running command:
###
###   rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CytoTree_1.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CytoTree.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CytoTree.buildbin-libdir CytoTree_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CytoTree’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c jaccard_coeff.cpp -o jaccard_coeff.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CytoTree.so RcppExports.o jaccard_coeff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/CytoTree.buildbin-libdir/00LOCK-CytoTree/00new/CytoTree/libs
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘flowCore’ for requests: ‘action’, ‘assign’, ‘Data’, ‘gate’, ‘tree’ when loading ‘flowUtils’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘flowCore’ for requests: ‘action’, ‘assign’, ‘Data’, ‘gate’, ‘tree’ when loading ‘flowUtils’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘flowCore’ for requests: ‘action’, ‘assign’, ‘Data’, ‘gate’, ‘tree’ when loading ‘flowUtils’
** testing if installed package keeps a record of temporary installation path
* DONE (CytoTree)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CytoTree.buildbin-libdir/CytoTree/libs/CytoTree.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "CytoTree.buildbin-libdir/CytoTree/libs/CytoTree.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "CytoTree.buildbin-libdir/CytoTree/libs/CytoTree.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "CytoTree.buildbin-libdir/CytoTree/libs/CytoTree.so"