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This page was generated on 2021-12-03 13:04:44 -0500 (Fri, 03 Dec 2021).

CHECK results for CellScore on nebbiolo2

To the developers/maintainers of the CellScore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellScore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 274/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellScore 1.14.0  (landing page)
Nancy Mah
Snapshot Date: 2021-12-02 01:55:06 -0500 (Thu, 02 Dec 2021)
git_url: https://git.bioconductor.org/packages/CellScore
git_branch: RELEASE_3_14
git_last_commit: f1b13c0
git_last_commit_date: 2021-10-26 12:41:51 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CellScore
Version: 1.14.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CellScore_1.14.0.tar.gz
StartedAt: 2021-12-02 06:32:15 -0500 (Thu, 02 Dec 2021)
EndedAt: 2021-12-02 06:35:39 -0500 (Thu, 02 Dec 2021)
EllapsedTime: 203.6 seconds
RetCode: 0
Status:   OK  
CheckDir: CellScore.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings CellScore_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/CellScore.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
CellScoreReport                24.426  0.576  25.003
heatmapOnOffMarkers            19.364  0.336  19.700
ScatterplotCellScoreComponents 18.673  0.304  18.976
RugplotCellScore               18.657  0.260  18.917
extractTransitions             18.430  0.272  18.703
PlotCosineSimHeatmap           15.060  0.296  15.356
CellScore                      11.816  0.536  12.352
BoxplotCellScore               11.827  0.500  12.326
PcaStandards                   10.824  0.240  11.064
CosineSimScore                 10.254  0.268  10.522
BarplotOnOff                    8.056  1.240   9.344
OnOff                           5.990  0.284   6.275
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

CellScore.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL CellScore
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘CellScore’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellScore)

Tests output


Example timings

CellScore.Rcheck/CellScore-Ex.timings

nameusersystemelapsed
BarplotOnOff8.0561.2409.344
BoxplotCellScore11.827 0.50012.326
CellScore11.816 0.53612.352
CellScoreReport24.426 0.57625.003
CosineSimScore10.254 0.26810.522
OnOff5.9900.2846.275
PcaStandards10.824 0.24011.064
PlotCosineSimHeatmap15.060 0.29615.356
RugplotCellScore18.657 0.26018.917
ScatterplotCellScoreComponents18.673 0.30418.976
extractTransitions18.430 0.27218.703
heatmapOnOffMarkers19.364 0.33619.700
rugplotDonorTargetTest000
scatterplotDonorTargetTest000