Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-19 13:06:20 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for CellMixS on tokay2


To the developers/maintainers of the CellMixS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellMixS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 271/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellMixS 1.10.0  (landing page)
Almut Lütge
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/CellMixS
git_branch: RELEASE_3_14
git_last_commit: 8690b35
git_last_commit_date: 2021-10-26 12:50:43 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CellMixS
Version: 1.10.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellMixS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CellMixS_1.10.0.tar.gz
StartedAt: 2022-01-18 16:54:35 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 17:01:00 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 384.7 seconds
RetCode: 0
Status:   OK  
CheckDir: CellMixS.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellMixS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CellMixS_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CellMixS.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellMixS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CellMixS' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellMixS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

CellMixS.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CellMixS_1.10.0.tar.gz && rm -rf CellMixS.buildbin-libdir && mkdir CellMixS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMixS.buildbin-libdir CellMixS_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CellMixS_1.10.0.zip && rm CellMixS_1.10.0.tar.gz CellMixS_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1450k  100 1450k    0     0  3996k      0 --:--:-- --:--:-- --:--:-- 4008k

install for i386

* installing *source* package 'CellMixS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellMixS'
    finding HTML links ... done
    CellMixS-package                        html  
    cms                                     html  
    finding level-2 HTML links ... done

    dot-cmsCell                             html  
    dot-defineSubspace                      html  
    dot-filterKnn                           html  
    dot-filterLocMin                        html  
    dot-ldfKnn                              html  
    dot-smoothCms                           html  
    entropy                                 html  
    evalIntegration                         html  
    isi                                     html  
    ldfDiff                                 html  
    ldfSce                                  html  
    locStructure                            html  
    mixMetric                               html  
    visCluster                              html  
    visGroup                                html  
    visHist                                 html  
    visIntegration                          html  
    visMetric                               html  
    visOverview                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellMixS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellMixS' as CellMixS_1.10.0.zip
* DONE (CellMixS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CellMixS' successfully unpacked and MD5 sums checked

Tests output

CellMixS.Rcheck/tests_i386/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CellMixS)
Loading required package: kSamples
Loading required package: SuppDists
> 
> test_check("CellMixS")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
> 
> proc.time()
   user  system elapsed 
  47.46    1.53   48.98 

CellMixS.Rcheck/tests_x64/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CellMixS)
Loading required package: kSamples
Loading required package: SuppDists
> 
> test_check("CellMixS")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
> 
> proc.time()
   user  system elapsed 
  57.67    0.81   58.46 

Example timings

CellMixS.Rcheck/examples_i386/CellMixS-Ex.timings

nameusersystemelapsed
cms1.740.151.95
entropy0.700.020.72
evalIntegration4.050.004.05
isi0.950.000.95
ldfDiff1.570.001.57
ldfSce0.870.030.90
locStructure1.470.031.50
mixMetric0.660.030.69
visCluster1.850.031.87
visGroup0.710.020.74
visHist2.190.012.20
visIntegration1.80.01.8
visMetric1.950.021.96
visOverview2.470.032.50

CellMixS.Rcheck/examples_x64/CellMixS-Ex.timings

nameusersystemelapsed
cms2.690.032.72
entropy0.720.080.80
evalIntegration3.850.023.87
isi0.770.010.78
ldfDiff1.570.031.61
ldfSce0.960.000.95
locStructure1.540.001.55
mixMetric0.690.070.75
visCluster2.060.002.07
visGroup0.770.000.76
visHist2.330.032.36
visIntegration2.080.012.09
visMetric2.070.032.09
visOverview2.850.022.87