Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-21 13:06:08 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for COCOA on tokay2


To the developers/maintainers of the COCOA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COCOA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 364/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COCOA 2.8.0  (landing page)
John Lawson
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/COCOA
git_branch: RELEASE_3_14
git_last_commit: 30a31c3
git_last_commit_date: 2021-10-26 12:47:47 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: COCOA
Version: 2.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/COCOA_2.8.0.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL COCOA_2.8.0.zip && rm COCOA_2.8.0.tar.gz COCOA_2.8.0.zip
StartedAt: 2022-01-20 07:03:40 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 07:05:50 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 130.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/COCOA_2.8.0.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL COCOA_2.8.0.zip && rm COCOA_2.8.0.tar.gz COCOA_2.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 1694k    3 66025    0     0  27331      0  0:01:03  0:00:02  0:01:01 27339
 20 1694k   20  346k    0     0   133k      0  0:00:12  0:00:02  0:00:10  133k
100 1694k  100 1694k    0     0   509k      0  0:00:03  0:00:03 --:--:--  509k

install for i386

* installing *source* package 'COCOA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'COCOA'
    finding HTML links ... done
    COCOA                                   html  
    aggregateSignal                         html  
    aggregateSignalGRList                   html  
    atf3_chr1                               html  
    brcaATACCoord1                          html  
    brcaATACData1                           html  
    brcaMCoord1                             html  
    brcaMetadata                            html  
    brcaMethylData1                         html  
    brcaPCScores                            html  
    brcaPCScores657                         html  
    convertToFromNullDist                   html  
    esr1_chr1                               html  
    gata3_chr1                              html  
    getGammaPVal                            html  
    getMetaRegionProfile                    html  
    getPermStat                             html  
    getTopRegions                           html  
    nrf1_chr1                               html  
    plotAnnoScoreDist                       html  
    regionQuantileByTargetVar               html  
    rsRankingIndex                          html  
    rsScoreHeatmap                          html  
    rsScores                                html  
    runCOCOA                                html  
    runCOCOAPerm                            html  
    signalAlongAxis                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'COCOA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COCOA' as COCOA_2.8.0.zip
* DONE (COCOA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'COCOA' successfully unpacked and MD5 sums checked