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This page was generated on 2022-01-24 13:05:58 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BrainStars on tokay2


To the developers/maintainers of the BrainStars package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BrainStars.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 212/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BrainStars 1.38.0  (landing page)
Itoshi NIKAIDO
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/BrainStars
git_branch: RELEASE_3_14
git_last_commit: 58371f0
git_last_commit_date: 2021-10-26 12:02:29 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: BrainStars
Version: 1.38.0
Command: chmod a+r BrainStars -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BrainStars
StartedAt: 2022-01-23 08:31:09 -0500 (Sun, 23 Jan 2022)
EndedAt: 2022-01-23 08:31:41 -0500 (Sun, 23 Jan 2022)
EllapsedTime: 32.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BrainStars -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BrainStars
###
##############################################################################
##############################################################################


* checking for file 'BrainStars/DESCRIPTION' ... OK
* preparing 'BrainStars':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BrainStars.Rnw' using Sweave
Loading required package: RCurl
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning: Package 'BrainStars' is deprecated and will be removed from
  Bioconductor version 3.15

Error: processing vignette 'BrainStars.Rnw' failed with diagnostics:
 chunk 11 
Error in count(response) : 
  'list' object cannot be coerced to type 'double'

--- failed re-building 'BrainStars.Rnw'

SUMMARY: processing the following file failed:
  'BrainStars.Rnw'

Error: Vignette re-building failed.
Execution halted