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This page was generated on 2021-10-23 14:05:54 -0400 (Sat, 23 Oct 2021).

BUILD results for BrainStars on nebbiolo2

To the developers/maintainers of the BrainStars package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BrainStars.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 212/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BrainStars 1.37.1  (landing page)
Itoshi NIKAIDO
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/BrainStars
git_branch: master
git_last_commit: 370ad7d
git_last_commit_date: 2021-06-21 10:39:16 -0400 (Mon, 21 Jun 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: BrainStars
Version: 1.37.1
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BrainStars
StartedAt: 2021-10-22 16:50:53 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 16:51:20 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 27.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BrainStars
###
##############################################################################
##############################################################################


* checking for file ‘BrainStars/DESCRIPTION’ ... OK
* preparing ‘BrainStars’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BrainStars.Rnw’ using Sweave
Loading required package: RCurl
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning: Package 'BrainStars' is deprecated and will be removed from
  Bioconductor version 3.15

Error: processing vignette 'BrainStars.Rnw' failed with diagnostics:
 chunk 11 
Error in count(response) : 
  'list' object cannot be coerced to type 'double'

--- failed re-building ‘BrainStars.Rnw’

SUMMARY: processing the following file failed:
  ‘BrainStars.Rnw’

Error: Vignette re-building failed.
Execution halted