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This page was generated on 2021-10-26 14:06:17 -0400 (Tue, 26 Oct 2021).

INSTALL results for BiocParallel on nebbiolo2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 165/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocParallel 1.27.17  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-10-25 14:50:11 -0400 (Mon, 25 Oct 2021)
git_url: https://git.bioconductor.org/packages/BiocParallel
git_branch: master
git_last_commit: aa6d054
git_last_commit_date: 2021-10-10 12:38:31 -0400 (Sun, 10 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: BiocParallel
Version: 1.27.17
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL BiocParallel
StartedAt: 2021-10-25 16:03:06 -0400 (Mon, 25 Oct 2021)
EndedAt: 2021-10-25 16:03:21 -0400 (Mon, 25 Oct 2021)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL BiocParallel
###
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘BiocParallel’ ...
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for shm_open in -lrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ipcmutex.cpp -o ipcmutex.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/fold.hpp:20,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/remove_if.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/remove.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function_types/components.hpp:44,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:10,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/tti/has_member_function.hpp:15,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:20,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o BiocParallel.so ipcmutex.o -lrt -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-BiocParallel/00new/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)