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This page was generated on 2021-10-20 12:05:02 -0400 (Wed, 20 Oct 2021).

INSTALL results for BPRMeth on riesling1

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raw results

Package 206/2072HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BPRMeth 1.19.0  (landing page)
Chantriolnt-Andreas Kapourani
Snapshot Date: 2021-10-19 14:50:04 -0400 (Tue, 19 Oct 2021)
git_url: https://git.bioconductor.org/packages/BPRMeth
git_branch: master
git_last_commit: 22ceb5f
git_last_commit_date: 2021-05-19 12:24:30 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BPRMeth
Version: 1.19.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BPRMeth_1.19.0.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.19.0.zip && rm BPRMeth_1.19.0.tar.gz BPRMeth_1.19.0.zip
StartedAt: 2021-10-19 19:15:51 -0400 (Tue, 19 Oct 2021)
EndedAt: 2021-10-19 19:18:44 -0400 (Tue, 19 Oct 2021)
EllapsedTime: 173.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BPRMeth_1.19.0.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.19.0.zip && rm BPRMeth_1.19.0.tar.gz BPRMeth_1.19.0.zip
###
##############################################################################
##############################################################################


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install for i386

* installing *source* package 'BPRMeth' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BPRMeth'
    finding HTML links ... done
    BPRMeth                                 html  
    bernoulli_data                          html  
    beta_data                               html  
    binomial_data                           html  
    boxplot_cluster_expr                    html  
    bpr_cluster_wrap                        html  
    bpr_optimize                            html  
    bpr_predict_wrap                        html  
    cluster_profiles_mle                    html  
    cluster_profiles_vb                     html  
    create_anno_region                      html  
    create_basis                            html  
    create_region_object                    html  
    design_matrix                           html  
    encode_expr                             html  
    encode_met                              html  
    eval_functions                          html  
    gaussian_data                           html  
    gex_data                                html  
    impute_bulk_met                         html  
    infer_profiles_gibbs                    html  
    infer_profiles_mle                      html  
    infer_profiles_vb                       html  
    inner_predict_model_expr                html  
    inner_train_model_expr                  html  
    meth_data                               html  
    model_log_likelihood                    html  
    old_boxplot_cluster_gex                 html  
    old_plot_cluster_prof                   html  
    old_plot_fitted_profiles                html  
    partition_bulk_dataset                  html  
    plot_cluster_profiles                   html  
    plot_infer_profiles                     html  
    finding level-2 HTML links ... done

    plot_predicted_expr                     html  
    pool_bs_seq_rep                         html  
    predict_expr                            html  
    preprocess_bs_seq                       html  
    preprocess_final_HTS_data               html  
    process_haib_caltech_wrap               html  
    read_anno                               html  
    read_bs_encode_haib                     html  
    read_chrom_size                         html  
    read_expr                               html  
    read_met                                html  
    read_rna_encode_caltech                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BPRMeth' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_likelihood.cpp -o model_likelihood.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BPRMeth' as BPRMeth_1.19.0.zip
* DONE (BPRMeth)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'BPRMeth' successfully unpacked and MD5 sums checked