Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-14 13:06:02 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BCRANK on tokay2


To the developers/maintainers of the BCRANK package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BCRANK.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 129/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BCRANK 1.56.0  (landing page)
Adam Ameur
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/BCRANK
git_branch: RELEASE_3_14
git_last_commit: 56cfe7e
git_last_commit_date: 2021-10-26 11:51:59 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BCRANK
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BCRANK_1.56.0.tar.gz && rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BCRANK.buildbin-libdir BCRANK_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BCRANK_1.56.0.zip && rm BCRANK_1.56.0.tar.gz BCRANK_1.56.0.zip
StartedAt: 2022-01-13 04:37:37 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 04:38:30 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 53.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BCRANK_1.56.0.tar.gz && rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BCRANK.buildbin-libdir BCRANK_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BCRANK_1.56.0.zip && rm BCRANK_1.56.0.tar.gz BCRANK_1.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 19 2046k   19  391k    0     0  1679k      0  0:00:01 --:--:--  0:00:01 1679k
100 2046k  100 2046k    0     0  3085k      0 --:--:-- --:--:-- --:--:-- 3086k

install for i386

* installing *source* package 'BCRANK' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c match_consensus.c -o match_consensus.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BCRANK.dll tmp.def init.o match_consensus.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BCRANK.buildbin-libdir/00LOCK-BCRANK/00new/BCRANK/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BCRANK'
    finding HTML links ... done
    BCRANK-internal                         html  
    BCRANKmatch-class                       html  
    BCRANKout                               html  
    BCRANKresult-class                      html  
    BCRANKsearch-class                      html  
    bcrank                                  html  
    matchingSites                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BCRANK' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c match_consensus.c -o match_consensus.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BCRANK.dll tmp.def init.o match_consensus.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BCRANK.buildbin-libdir/BCRANK/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BCRANK' as BCRANK_1.56.0.zip
* DONE (BCRANK)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BCRANK' successfully unpacked and MD5 sums checked