Back to Multiple platform build/check report for BioC 3.14
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-22 12:04:51 -0400 (Fri, 22 Oct 2021).

BUILD BIN results for BCRANK on merida1

To the developers/maintainers of the BCRANK package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BCRANK.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 129/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BCRANK 1.55.0  (landing page)
Adam Ameur
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/BCRANK
git_branch: master
git_last_commit: 18364b8
git_last_commit_date: 2021-05-19 11:40:23 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BCRANK
Version: 1.55.0
Command: rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BCRANK_1.55.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BCRANK.buildbin-libdir
StartedAt: 2021-10-22 11:26:47 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 11:27:33 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 46.4 seconds
RetCode: 0
Status:   OK  
PackageFile: BCRANK_1.55.0.tgz
PackageFileSize: 2.356 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BCRANK_1.55.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BCRANK.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BCRANK.buildbin-libdir BCRANK_1.55.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BCRANK’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c match_consensus.c -o match_consensus.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BCRANK.so init.o match_consensus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/BCRANK.buildbin-libdir/00LOCK-BCRANK/00new/BCRANK/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BCRANK)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"