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This page was generated on 2021-10-22 12:04:50 -0400 (Fri, 22 Oct 2021).

BUILD BIN results for BAGS on merida1

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raw results

Package 108/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BAGS 2.33.0  (landing page)
Alejandro Quiroz-Zarate
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/BAGS
git_branch: master
git_last_commit: 817b625
git_last_commit_date: 2021-05-19 11:51:16 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BAGS
Version: 2.33.0
Command: rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAGS_2.33.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BAGS.buildbin-libdir
StartedAt: 2021-10-22 11:25:05 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 11:26:02 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 56.9 seconds
RetCode: 0
Status:   OK  
PackageFile: BAGS_2.33.0.tgz
PackageFileSize: 284.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAGS_2.33.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BAGS.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BAGS.buildbin-libdir BAGS_2.33.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BAGS’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
./FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
    double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                     ^
./FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                        ^
./FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                             ^
./FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                           ^
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
           ^
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                   ^
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                           ^
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                   ^
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                          ^
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                               ^
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
32 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAGS.so BAGS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BAGS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BAGS.buildbin-libdir/BAGS/libs/BAGS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "BAGS.buildbin-libdir/BAGS/libs/BAGS.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "BAGS.buildbin-libdir/BAGS/libs/BAGS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "BAGS.buildbin-libdir/BAGS/libs/BAGS.so"