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This page was generated on 2021-11-26 15:05:42 -0500 (Fri, 26 Nov 2021).

BUILD BIN results for BAC on machv2

To the developers/maintainers of the BAC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BAC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 104/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BAC 1.54.0  (landing page)
Raphael Gottardo
Snapshot Date: 2021-11-25 04:15:05 -0500 (Thu, 25 Nov 2021)
git_url: https://git.bioconductor.org/packages/BAC
git_branch: RELEASE_3_14
git_last_commit: a404e5d
git_last_commit_date: 2021-10-26 11:51:51 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BAC
Version: 1.54.0
Command: rm -rf BAC.buildbin-libdir && mkdir BAC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAC_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BAC.buildbin-libdir
StartedAt: 2021-11-25 23:24:59 -0500 (Thu, 25 Nov 2021)
EndedAt: 2021-11-25 23:26:08 -0500 (Thu, 25 Nov 2021)
EllapsedTime: 69.3 seconds
RetCode: 0
Status:   OK  
PackageFile: BAC_1.54.0.tgz
PackageFileSize: 981.4 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf BAC.buildbin-libdir && mkdir BAC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAC_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BAC.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BAC.buildbin-libdir BAC_1.54.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BAC’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BAC.c -o BAC.o
BAC.c:65:15: warning: implicit conversion from 'double' to 'int' changes value from 0.01 to 0 [-Wliteral-conversion]
        w=dvector(*G,0.01);
          ~~~~~~~    ^~~~
1 warning generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c util.c -o util.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAC.so BAC.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/BAC.buildbin-libdir/00LOCK-BAC/00new/BAC/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BAC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BAC.buildbin-libdir/BAC/libs/BAC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "BAC.buildbin-libdir/BAC/libs/BAC.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "BAC.buildbin-libdir/BAC/libs/BAC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "BAC.buildbin-libdir/BAC/libs/BAC.so"