Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-21 13:05:58 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for AssessORF on tokay2


To the developers/maintainers of the AssessORF package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AssessORF.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 91/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AssessORF 1.12.0  (landing page)
Deepank Korandla
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/AssessORF
git_branch: RELEASE_3_14
git_last_commit: 25d63b8
git_last_commit_date: 2021-10-26 12:47:55 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AssessORF
Version: 1.12.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AssessORF_1.12.0.tar.gz
StartedAt: 2022-01-20 15:58:45 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 16:02:27 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 221.9 seconds
RetCode: 0
Status:   OK  
CheckDir: AssessORF.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AssessORF_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/AssessORF.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AssessORF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AssessORF' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AssessORF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
MapAssessmentData 16.39   1.62   18.10
plot.Assessment   12.88   2.49   15.36
AssessGenes       10.65   0.20   10.91
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
MapAssessmentData 18.56   1.88   20.45
plot.Assessment   10.08   2.76   12.84
AssessGenes       10.92   0.16   11.07
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

AssessORF.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AssessORF_1.12.0.tar.gz && rm -rf AssessORF.buildbin-libdir && mkdir AssessORF.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AssessORF.buildbin-libdir AssessORF_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AssessORF_1.12.0.zip && rm AssessORF_1.12.0.tar.gz AssessORF_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 20 4553k   20  922k    0     0  1789k      0  0:00:02 --:--:--  0:00:02 1791k
 94 4553k   94 4300k    0     0  2859k      0  0:00:01  0:00:01 --:--:-- 2859k
100 4553k  100 4553k    0     0  2889k      0  0:00:01  0:00:01 --:--:-- 2890k

install for i386

* installing *source* package 'AssessORF' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AssessORF'
    finding HTML links ... done
    AssessGenes                             html  
    Assessment-class                        html  
    CompareAssessmentResults                html  
    MapAssessmentData                       html  
    ScoreAssessmentResults                  html  
    as.matrix.Assessment                    html  
    mosaicplot.Assessment                   html  
    plot.Assessment                         html  
    print.Assessment                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AssessORF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AssessORF' as AssessORF_1.12.0.zip
* DONE (AssessORF)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'AssessORF' successfully unpacked and MD5 sums checked

Tests output


Example timings

AssessORF.Rcheck/examples_i386/AssessORF-Ex.timings

nameusersystemelapsed
AssessGenes10.65 0.2010.91
CompareAssessmentResults0.020.000.03
MapAssessmentData16.39 1.6218.10
ScoreAssessmentResults000
as.matrix.Assessment0.020.000.01
mosaicplot.Assessment0.010.000.02
plot.Assessment12.88 2.4915.36
print.Assessment1.570.081.66

AssessORF.Rcheck/examples_x64/AssessORF-Ex.timings

nameusersystemelapsed
AssessGenes10.92 0.1611.07
CompareAssessmentResults0.030.000.04
MapAssessmentData18.56 1.8820.45
ScoreAssessmentResults000
as.matrix.Assessment0.000.010.02
mosaicplot.Assessment0.020.020.03
plot.Assessment10.08 2.7612.84
print.Assessment0.810.020.83