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This page was generated on 2021-11-26 15:05:41 -0500 (Fri, 26 Nov 2021).

BUILD BIN results for AneuFinder on machv2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 54/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AneuFinder 1.22.0  (landing page)
Aaron Taudt
Snapshot Date: 2021-11-25 04:15:05 -0500 (Thu, 25 Nov 2021)
git_url: https://git.bioconductor.org/packages/AneuFinder
git_branch: RELEASE_3_14
git_last_commit: ea0beb3
git_last_commit_date: 2021-10-26 12:26:30 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AneuFinder
Version: 1.22.0
Command: rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AneuFinder_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R AneuFinder.buildbin-libdir
StartedAt: 2021-11-25 23:20:39 -0500 (Thu, 25 Nov 2021)
EndedAt: 2021-11-25 23:21:55 -0500 (Thu, 25 Nov 2021)
EllapsedTime: 75.5 seconds
RetCode: 0
Status:   OK  
PackageFile: AneuFinder_1.22.0.tgz
PackageFileSize: 2.446 MiB

Command output

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###
### Running command:
###
###   rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AneuFinder_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R AneuFinder.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AneuFinder.buildbin-libdir AneuFinder_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘AneuFinder’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_interface.cpp -o R_interface.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c densities.cpp -o densities.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.cpp -o init.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c loghmm.cpp -o loghmm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c scalehmm.cpp -o scalehmm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c utility.cpp -o utility.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/AneuFinder.buildbin-libdir/00LOCK-AneuFinder/00new/AneuFinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR AneuFinder.buildbin-libdir/AneuFinder/libs/AneuFinder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs/AneuFinder.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs/AneuFinder.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs/AneuFinder.so"