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This page was generated on 2021-10-23 14:06:18 -0400 (Sat, 23 Oct 2021).

CHECK results for ASpediaFI on riesling1

To the developers/maintainers of the ASpediaFI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpediaFI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 89/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ASpediaFI 1.7.0  (landing page)
Doyeong Yu
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/ASpediaFI
git_branch: master
git_last_commit: a2083d2
git_last_commit_date: 2021-05-19 12:47:16 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ASpediaFI
Version: 1.7.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpediaFI.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ASpediaFI_1.7.0.tar.gz
StartedAt: 2021-10-23 04:57:01 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 05:02:57 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 356.4 seconds
RetCode: 0
Status:   OK  
CheckDir: ASpediaFI.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpediaFI.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ASpediaFI_1.7.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/ASpediaFI.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpediaFI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpediaFI' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpediaFI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
annotateASevents 22.42   0.11   22.54
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
annotateASevents 24.56   0.14    24.7
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ASpediaFI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ASpediaFI_1.7.0.tar.gz && rm -rf ASpediaFI.buildbin-libdir && mkdir ASpediaFI.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpediaFI.buildbin-libdir ASpediaFI_1.7.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ASpediaFI_1.7.0.zip && rm ASpediaFI_1.7.0.tar.gz ASpediaFI_1.7.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2089k  100 2089k    0     0  5011k      0 --:--:-- --:--:-- --:--:-- 5011k

install for i386

* installing *source* package 'ASpediaFI' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'as.table' in package 'ASpediaFI'
** help
*** installing help indices
  converting help for package 'ASpediaFI'
    finding HTML links ... done
    ASpediaFI-accessor                      html  
    ASpediaFI-class                         html  
    GSE114922.fpkm                          html  
    GSE114922.psi                           html  
    analyzeFI                               html  
    annotateASevents                        html  
    exportNetwork                           html  
    quantifyPSI                             html  
    visualize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ASpediaFI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpediaFI' as ASpediaFI_1.7.0.zip
* DONE (ASpediaFI)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'ASpediaFI' successfully unpacked and MD5 sums checked

Tests output


Example timings

ASpediaFI.Rcheck/examples_i386/ASpediaFI-Ex.timings

nameusersystemelapsed
ASpediaFI-accessor0.110.000.11
ASpediaFI-class0.120.000.13
GSE114922.fpkm0.030.000.03
GSE114922.psi0.080.000.08
analyzeFI0.780.030.81
annotateASevents22.42 0.1122.54
exportNetwork0.010.000.01
quantifyPSI0.020.000.02
visualize000

ASpediaFI.Rcheck/examples_x64/ASpediaFI-Ex.timings

nameusersystemelapsed
ASpediaFI-accessor0.080.000.07
ASpediaFI-class0.030.000.03
GSE114922.fpkm0.020.020.03
GSE114922.psi0.060.000.07
analyzeFI0.140.030.17
annotateASevents24.56 0.1424.70
exportNetwork0.020.000.02
quantifyPSI0.010.000.01
visualize000