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This page was generated on 2021-10-26 14:06:51 -0400 (Tue, 26 Oct 2021).

CHECK results for AMOUNTAIN on riesling1

To the developers/maintainers of the AMOUNTAIN package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AMOUNTAIN.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 50/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMOUNTAIN 1.19.0  (landing page)
Dong Li
Snapshot Date: 2021-10-25 14:50:11 -0400 (Mon, 25 Oct 2021)
git_url: https://git.bioconductor.org/packages/AMOUNTAIN
git_branch: master
git_last_commit: 6763eaa
git_last_commit_date: 2021-05-19 12:21:36 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: AMOUNTAIN
Version: 1.19.0
Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AMOUNTAIN.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AMOUNTAIN_1.19.0.tar.gz
StartedAt: 2021-10-26 00:16:42 -0400 (Tue, 26 Oct 2021)
EndedAt: 2021-10-26 00:17:17 -0400 (Tue, 26 Oct 2021)
EllapsedTime: 34.9 seconds
RetCode: 0
Status:   OK  
CheckDir: AMOUNTAIN.Rcheck
Warnings: 0

Command output

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##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AMOUNTAIN.install-out.txt --library=D:\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings AMOUNTAIN_1.19.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.14-bioc/meat/AMOUNTAIN.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AMOUNTAIN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AMOUNTAIN' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AMOUNTAIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbuild/bbs-3.14-bioc/R/library/AMOUNTAIN/libs/i386/AMOUNTAIN.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'D:/biocbuild/bbs-3.14-bioc/R/library/AMOUNTAIN/libs/x64/AMOUNTAIN.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.14-bioc/meat/AMOUNTAIN.Rcheck/00check.log'
for details.



Installation output

AMOUNTAIN.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/AMOUNTAIN_1.19.0.tar.gz && rm -rf AMOUNTAIN.buildbin-libdir && mkdir AMOUNTAIN.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMOUNTAIN.buildbin-libdir AMOUNTAIN_1.19.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL AMOUNTAIN_1.19.0.zip && rm AMOUNTAIN_1.19.0.tar.gz AMOUNTAIN_1.19.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  319k  100  319k    0     0  1401k      0 --:--:-- --:--:-- --:--:-- 1401k

install for i386

* installing *source* package 'AMOUNTAIN' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c AMOUNTAIN.c -o AMOUNTAIN.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o AMOUNTAIN.dll tmp.def AMOUNTAIN.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/AMOUNTAIN.buildbin-libdir/00LOCK-AMOUNTAIN/00new/AMOUNTAIN/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AMOUNTAIN'
    finding HTML links ... done
    CGPFixSS                                html  
    CGPFixSSMultiLayer                      html  
    CGPFixSSTwolayer                        html  
    EuclideanProjectionENNORM               html  
    moduleIdentificationGPFixSS             html  
    moduleIdentificationGPFixSSMultilayer   html  
    moduleIdentificationGPFixSSTwolayer     html  
    multilayernetworkSimulation             html  
    networkSimulation                       html  
    twolayernetworkSimulation               html  
** building package indices
** installing vignettes
   'AMOUNTAIN.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AMOUNTAIN' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c AMOUNTAIN.c -o AMOUNTAIN.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o AMOUNTAIN.dll tmp.def AMOUNTAIN.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/AMOUNTAIN.buildbin-libdir/AMOUNTAIN/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMOUNTAIN' as AMOUNTAIN_1.19.0.zip
* DONE (AMOUNTAIN)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'AMOUNTAIN' successfully unpacked and MD5 sums checked

Tests output


Example timings

AMOUNTAIN.Rcheck/examples_i386/AMOUNTAIN-Ex.timings

nameusersystemelapsed
CGPFixSS0.000.020.01
CGPFixSSMultiLayer000
CGPFixSSTwolayer000
EuclideanProjectionENNORM000
moduleIdentificationGPFixSS000
moduleIdentificationGPFixSSMultilayer000
moduleIdentificationGPFixSSTwolayer0.020.000.01
multilayernetworkSimulation000
networkSimulation000
twolayernetworkSimulation000

AMOUNTAIN.Rcheck/examples_x64/AMOUNTAIN-Ex.timings

nameusersystemelapsed
CGPFixSS000
CGPFixSSMultiLayer0.010.000.02
CGPFixSSTwolayer0.020.000.01
EuclideanProjectionENNORM000
moduleIdentificationGPFixSS000
moduleIdentificationGPFixSSMultilayer000
moduleIdentificationGPFixSSTwolayer0.000.010.01
multilayernetworkSimulation000
networkSimulation000
twolayernetworkSimulation000