Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-21 13:05:56 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ALPS on tokay2


To the developers/maintainers of the ALPS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ALPS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 45/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ALPS 1.8.0  (landing page)
Venu Thatikonda
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ALPS
git_branch: RELEASE_3_14
git_last_commit: 3dd0106
git_last_commit_date: 2021-10-26 12:55:19 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ALPS
Version: 1.8.0
Command: chmod a+r ALPS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data ALPS
StartedAt: 2022-01-20 08:18:49 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 08:23:56 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 306.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r ALPS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data ALPS
###
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* checking for file 'ALPS/DESCRIPTION' ... OK
* preparing 'ALPS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ALPS-vignette.Rmd' using rmarkdown
Quitting from lines 238-246 (ALPS-vignette.Rmd) 
Error: processing vignette 'ALPS-vignette.Rmd' failed with diagnostics:
object 'lbs' not found
--- failed re-building 'ALPS-vignette.Rmd'

SUMMARY: processing the following file failed:
  'ALPS-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted