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This page was generated on 2021-06-18 14:06:55 -0400 (Fri, 18 Jun 2021).

BUILD BIN results for qpgraph on machv2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qpgraph.git to
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raw results

Package 1473/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.26.0  (landing page)
Robert Castelo
Snapshot Date: 2021-06-17 06:50:12 -0400 (Thu, 17 Jun 2021)
URL: https://git.bioconductor.org/packages/qpgraph
Branch: RELEASE_3_13
Last Commit: 80062b5
Last Changed Date: 2021-05-19 11:42:31 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: qpgraph
Version: 2.26.0
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir
StartedAt: 2021-06-18 02:59:18 -0400 (Fri, 18 Jun 2021)
EndedAt: 2021-06-18 03:00:50 -0400 (Fri, 18 Jun 2021)
EllapsedTime: 91.9 seconds
RetCode: 0
Status:   OK  
PackageFile: qpgraph_2.26.0.tgz
PackageFileSize: 4.068 MiB

Command output

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###
### Running command:
###
###   rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_2.26.0.tar.gz'
>>>>>>> 

* installing *source* package ‘qpgraph’ ...
** using staged installation
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... x86_64-apple-darwin18.7.0
checking host system type... x86_64-apple-darwin18.7.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -Wall -g -O2  -c cliquer.c -o cliquer.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -Wall -g -O2  -c graph.c -o graph.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -Wall -g -O2  -c qpgraph.c -o qpgraph.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -Wall -g -O2  -c reorder.c -o reorder.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
** testing if installed package keeps a record of temporary installation path
* DONE (qpgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/qpgraph.so"