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INSTALL report for phenoTest on riesling1

This page was generated on 2021-05-13 12:13:09 -0400 (Thu, 13 May 2021).

To the developers/maintainers of the phenoTest package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1370/2022HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoTest 1.39.1  (landing page)
Evarist Planet
Snapshot Date: 2021-05-12 14:50:04 -0400 (Wed, 12 May 2021)
URL: https://git.bioconductor.org/packages/phenoTest
Branch: master
Last Commit: 171109d
Last Changed Date: 2021-01-27 07:51:58 -0400 (Wed, 27 Jan 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    NA  

Summary

Package: phenoTest
Version: 1.39.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/phenoTest_1.39.1.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.39.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.39.1.zip && rm phenoTest_1.39.1.tar.gz phenoTest_1.39.1.zip
StartedAt: 2021-05-12 19:50:18 -0400 (Wed, 12 May 2021)
EndedAt: 2021-05-12 19:52:08 -0400 (Wed, 12 May 2021)
EllapsedTime: 109.6 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/phenoTest_1.39.1.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.39.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.39.1.zip && rm phenoTest_1.39.1.tar.gz phenoTest_1.39.1.zip
###
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100  973k  100  973k    0     0  2391k      0 --:--:-- --:--:-- --:--:-- 2397k

install for i386

* installing *source* package 'phenoTest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenoTest'
    finding HTML links ... done
    ClusterPhenoTest                        html  
    ExpressionPhenoTest                     html  
    barplotSignatures-methods               html  
    barplotSignifSignatures-methods         html  
    epheno-class                            html  
    finding level-2 HTML links ... done

    epheno                                  html  
    epheno2html                             html  
    ephenoGetters                           html  
    eset                                    html  
    eset.genelevel                          html  
    eset2genelevel                          html  
    export2CSV-methods                      html  
    export2CSV                              html  
    findCopyNumber                          html  
    genesInArea                             html  
    getEsPositions                          html  
    getGseaSignatures                       html  
    getVars2test-methods                    html  
    getVars2test                            html  
    gsea                                    html  
    gsea.subset                             html  
    gsea2html                               html  
    gseaData-class                          html  
    gseaSignatures-class                    html  
    gseaSignatures-methods                  html  
    gseaSignatures                          html  
    gseaSignaturesSign-class                html  
    gseaSignaturesVar-class                 html  
    gseaSignificance                        html  
    gseaSignificanceSign-class              html  
    gseaSignificanceVar-class               html  
    heatmapPhenoTest-methods                html  
    heatmapPhenoTest                        html  
    pAdjust-methods                         html  
    pAdjust                                 html  
    pca                                     html  
    phenoTest-package                       html  
    plot.gsea                               html  
    plot.gseaSignatures                     html  
    plots4epheno                            html  
    show-methods                            html  
    smoothCoxph                             html  
    summary.gsea                            html  
    summary.gseaSignificance                html  
    write.html                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenoTest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenoTest' as phenoTest_1.39.1.zip
* DONE (phenoTest)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'phenoTest' successfully unpacked and MD5 sums checked