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This page was generated on 2021-07-23 15:06:11 -0400 (Fri, 23 Jul 2021).

CHECK results for mogsa on tokay2

To the developers/maintainers of the mogsa package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1175/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mogsa 1.26.0  (landing page)
Chen Meng
Snapshot Date: 2021-07-22 04:50:13 -0400 (Thu, 22 Jul 2021)
URL: https://git.bioconductor.org/packages/mogsa
Branch: RELEASE_3_13
Last Commit: 8fbbfc7
Last Changed Date: 2021-05-19 12:12:42 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: mogsa
Version: 1.26.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mogsa.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings mogsa_1.26.0.tar.gz
StartedAt: 2021-07-23 02:26:42 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 02:30:08 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 205.8 seconds
RetCode: 0
Status:   OK  
CheckDir: mogsa.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mogsa.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings mogsa_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/mogsa.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mogsa.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/mogsa_1.26.0.tar.gz && rm -rf mogsa.buildbin-libdir && mkdir mogsa.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mogsa.buildbin-libdir mogsa_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL mogsa_1.26.0.zip && rm mogsa_1.26.0.tar.gz mogsa_1.26.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  301k  100  301k    0     0  1776k      0 --:--:-- --:--:-- --:--:-- 1786k

install for i386

* installing *source* package 'mogsa' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mogsa'
    finding HTML links ... done
    GIS                                     html  
    NCI60_4array_supdata                    html  
    NCI60_4arrays                           html  
    annotate.gs                             html  
    biSoftK                                 html  
    bootMbpca                               html  
    bootMbpcaK                              html  
    bootMoa                                 html  
    box.gs.feature                          html  
    combine-methods                         html  
    decompose.gs.group                      html  
    decompose.gs.ind                        html  
    deflat                                  html  
    distMoa                                 html  
    getmgsa                                 html  
    matpower                                html  
    mbpca                                   html  
    mgsa-class                              html  
    moGap                                   html  
    moa-class                               html  
    moa                                     html  
    moa.sup-class                           html  
    moaCoef                                 html  
    moaScore                                html  
    mogsa-package                           html  
    mogsa                                   html  
    msvd                                    html  
    nipalsSoftK                             html  
    pairwise.rv                             html  
    plot-methods                            html  
    plotGS                                  html  
    prepGraphite                            html  
    prepMsigDB                              html  
    prepSupMoa                              html  
    print-methods                           html  
    processOpt                              html  
    show-methods                            html  
    softK                                   html  
    summary-methods                         html  
    sup.moa                                 html  
    toMoa                                   html  
    wsvd                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.26.0.zip
* DONE (mogsa)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'mogsa' successfully unpacked and MD5 sums checked

Tests output


Example timings

mogsa.Rcheck/examples_i386/mogsa-Ex.timings

nameusersystemelapsed
GIS0.640.000.65
annotate.gs0.070.030.10
bootMbpca000
bootMoa000
box.gs.feature0.190.010.20
combine-methods0.560.020.58
decompose.gs.group0.110.010.13
decompose.gs.ind0.120.000.12
distMoa0.220.020.24
getmgsa0.110.000.11
matpower000
mbpca2.350.032.37
mgsa-class0.210.000.22
moGap1.910.021.92
moa-class0.080.000.08
moa0.620.010.64
moa.sup-class0.110.000.11
moaCoef0.660.000.66
moaScore0.250.000.25
mogsa-package0.200.020.21
mogsa0.320.010.33
pairwise.rv0.010.000.02
plotGS0.140.000.14
prepGraphite0.330.020.34
prepMsigDB0.020.000.02
prepSupMoa2.980.063.04
softK000
sup.moa0.310.020.33
wsvd000

mogsa.Rcheck/examples_x64/mogsa-Ex.timings

nameusersystemelapsed
GIS0.610.020.62
annotate.gs0.090.000.10
bootMbpca000
bootMoa000
box.gs.feature0.150.010.17
combine-methods0.580.000.58
decompose.gs.group0.090.020.11
decompose.gs.ind0.100.000.09
distMoa0.230.000.24
getmgsa0.110.000.11
matpower000
mbpca2.080.012.09
mgsa-class0.170.000.17
moGap2.520.032.55
moa-class0.070.000.07
moa0.540.020.55
moa.sup-class0.090.000.09
moaCoef0.250.000.25
moaScore0.230.000.24
mogsa-package0.190.000.19
mogsa0.280.000.28
pairwise.rv0.010.000.02
plotGS0.110.000.11
prepGraphite0.270.000.26
prepMsigDB000
prepSupMoa2.720.032.75
softK000
sup.moa0.320.000.31
wsvd000