Back to Multiple platform build/check report for BioC 3.13
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-08-02 15:05:13 -0400 (Mon, 02 Aug 2021).

CHECK results for graph on tokay2

To the developers/maintainers of the graph package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graph.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 805/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graph 1.70.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-08-01 04:50:10 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/graph
Branch: RELEASE_3_13
Last Commit: 1c28350
Last Changed Date: 2021-05-19 11:33:03 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: graph
Version: 1.70.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:graph.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings graph_1.70.0.tar.gz
StartedAt: 2021-08-02 00:15:48 -0400 (Mon, 02 Aug 2021)
EndedAt: 2021-08-02 00:17:26 -0400 (Mon, 02 Aug 2021)
EllapsedTime: 98.4 seconds
RetCode: 0
Status:   OK  
CheckDir: graph.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:graph.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings graph_1.70.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.70.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'package' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/graph/libs/i386/BioC_graph.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/graph/libs/x64/BioC_graph.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'graph_unit_tests.R'
 OK
** running tests for arch 'x64' ...
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.Rcheck/00check.log'
for details.



Installation output

graph.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/graph_1.70.0.tar.gz && rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL graph_1.70.0.zip && rm graph_1.70.0.tar.gz graph_1.70.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  330k  100  330k    0     0  1785k      0 --:--:-- --:--:-- --:--:-- 1793k

install for i386

* installing *source* package 'graph' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'graph'
    finding HTML links ... done
    DFS                                     html  
    IMCA                                    html  
    MAPKsig                                 html  
    MultiGraph-class                        html  
REDIRECT:topic	 nodeData<-,MultiGraph,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,MultiGraph,missing,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<- -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<-,MultiGraph,character,character,ANY-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeDataDefaults<-,MultiGraph,character,missing,list-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,MultiGraph,character,ANY-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,MultiGraph,missing,list-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<- -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,character,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,character,missing,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,missing,character,character-method -> MultiGraph-class.html [ FAIL ]
REDIRECT:topic	 mgEdgeData<-,MultiGraph,character,missing,missing,character-method -> MultiGraph-class.html [ FAIL ]
    acc-methods                             html  
    addEdge                                 html  
    addNode                                 html  
    adj-methods                             html  
    adjacencyMatrix                         html  
    apoptosisGraph                          html  
    attrData-class                          html  
REDIRECT:topic	 attrDataItem<-,attrData,character,character-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 attrDefaults<-,attrData,character,ANY-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 attrDefaults<-,attrData,missing,list-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 names<-,attrData,character-method -> attrData-class.html [ FAIL ]
REDIRECT:topic	 removeAttrDataItem<- -> attrData-class.html [ FAIL ]
REDIRECT:topic	 removeAttrDataItem<-,attrData,character,NULL-method -> attrData-class.html [ FAIL ]
    attrDataItem-methods                    html  
REDIRECT:topic	 attrDataItem<--methods -> attrDataItem-methods.html [ FAIL ]
REDIRECT:topic	 attrDataItem<- -> attrDataItem-methods.html [ FAIL ]
    attrDefaults-methods                    html  
REDIRECT:topic	 attrDefaults<--methods -> attrDefaults-methods.html [ FAIL ]
REDIRECT:topic	 attrDefaults<- -> attrDefaults-methods.html [ FAIL ]
    aveNumEdges                             html  
    biocRepos                               html  
    boundary                                html  
    calcProb                                html  
    calcSumProb                             html  
    clearNode                               html  
    clusterGraph-class                      html  
REDIRECT:topic	 nodes<-,clusterGraph,character-method -> clusterGraph-class.html [ FAIL ]
    clusteringCoefficient-methods           html  
    combineNodes                            html  
    defunct                                 html  
    distGraph-class                         html  
    duplicatedEdges                         html  
    edgeData-methods                        html  
REDIRECT:topic	 edgeData<--methods -> edgeData-methods.html [ FAIL ]
REDIRECT:topic	 edgeData<- -> edgeData-methods.html [ FAIL ]
    edgeDataDefaults-methods                html  
REDIRECT:topic	 edgeDataDefaults<--methods -> edgeDataDefaults-methods.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<- -> edgeDataDefaults-methods.html [ FAIL ]
    edgeMatrix                              html  
    edgeSets                                html  
    edgeWeights                             html  
    fromGXL-methods                         html  
    graph-class                             html  
REDIRECT:topic	 edgeDataDefaults<-,graph,missing,list-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graph,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,missing,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,missing,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,character,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,character,missing,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graph,missing,character,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgemode<- -> graph-class.html [ FAIL ]
REDIRECT:topic	 edgemode<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,missing,list-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graph,character,ANY-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graph,character,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graph,missing,character-method -> graph-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graph,character-method -> graph-class.html [ FAIL ]
    graph2SparseM                           html  
    graphAM-class                           html  
REDIRECT:topic	 nodes<-,graphAM,character-method -> graphAM-class.html [ FAIL ]
    graphBAM-class                          html  
REDIRECT:topic	 edgemode<-,graphBAM,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,missing,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,missing,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,character,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,character,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,character,missing,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeData<-,graphBAM,missing,missing,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graphBAM,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 edgeDataDefaults<-,graphBAM,missing,list-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,missing,list-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graphBAM,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,character,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<-,graphBAM,missing,ANY-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graphBAM,character,character-method -> graphBAM-class.html [ FAIL ]
REDIRECT:topic	 nodeData<-,graphBAM,missing,character-method -> graphBAM-class.html [ FAIL ]
    graphExamples                           html  
    graphNEL-class                          html  
REDIRECT:topic	 nodes<- -> graphNEL-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,graphNEL,character-method -> graphNEL-class.html [ FAIL ]
    inEdges                                 html  
    internal                                html  
    isAdjacent-methods                      html  
    isDirected-methods                      html  
    leaves                                  html  
    listEdges                               html  
    matrix2Graph                            html  
    mostEdges                               html  
    multigraph                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/multiGraph-class.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/show,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/isDirected,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/nodes,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numNodes,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/edges,multiGraph-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numEdges,multiGraph-method.html
    nodeData-methods                        html  
REDIRECT:topic	 nodeData<--methods -> nodeData-methods.html [ FAIL ]
REDIRECT:topic	 nodeData<- -> nodeData-methods.html [ FAIL ]
    nodeDataDefaults-methods                html  
REDIRECT:topic	 nodeDataDefaults<--methods -> nodeDataDefaults-methods.html [ FAIL ]
REDIRECT:topic	 nodeDataDefaults<- -> nodeDataDefaults-methods.html [ FAIL ]
    numNoEdges                              html  
    pancrCaIni                              html  
    randomEGraph                            html  
    randomGraph                             html  
    randomNodeGraph                         html  
    removeEdge                              html  
    removeNode                              html  
    renderInfo-class                        html  
REDIRECT:topic	 edgeRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 nodeRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 parRenderInfo<- -> renderInfo-class.html [ FAIL ]
REDIRECT:topic	 graphRenderInfo<- -> renderInfo-class.html [ FAIL ]
    reverseEdgeDirections                   html  
    settings                                html  
    simpleEdge-class                        html  
    standardLabeling                        html  
    subGraph                                html  
    toDotR-methods                          html  
    toDotWithRI                             html  
    ugraph                                  html  
    validGraph                              html  
    write.tlp                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'graph' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c graph.c -o graph.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/graph.buildbin-libdir/graph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graph' as graph_1.70.0.zip
* DONE (graph)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'graph' successfully unpacked and MD5 sums checked

Tests output

graph.Rcheck/tests_i386/graph_unit_tests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("graph", pattern="_test.R")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min



RUNIT TEST PROTOCOL -- Mon Aug 02 00:17:08 2021 
*********************************************** 
Number of test functions: 206 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
graph RUnit Tests - 206 test functions, 0 errors, 0 failures
Number of test functions: 206 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   5.31    0.14    6.98 

graph.Rcheck/tests_x64/graph_unit_tests.Rout


R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("graph", pattern="_test.R")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min



RUNIT TEST PROTOCOL -- Mon Aug 02 00:17:12 2021 
*********************************************** 
Number of test functions: 206 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
graph RUnit Tests - 206 test functions, 0 errors, 0 failures
Number of test functions: 206 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   4.20    0.12    4.31 

Example timings

graph.Rcheck/examples_i386/graph-Ex.timings

nameusersystemelapsed
DFS0.030.000.03
IMCA0.270.000.27
MAPKsig0.180.000.18
MultiGraph-class0.150.000.15
acc-methods000
addEdge0.050.000.05
addNode0.010.000.02
adj-methods000
adjacencyMatrix000
apoptosisGraph0.020.020.03
attrData-class000
aveNumEdges000
biocRepos0.000.010.01
boundary000
calcProb000
calcSumProb000
clearNode0.020.000.02
clusterGraph-class0.010.000.01
clusteringCoefficient-methods0.030.000.03
combineNodes0.080.000.08
distGraph-class000
duplicatedEdges000
edgeMatrix0.020.000.02
edgeSets0.030.020.05
edgeWeights0.010.000.01
fromGXL-methods0.140.050.19
graph-class000
graph2SparseM0.100.000.09
graphAM-class0.010.000.02
graphBAM-class0.020.000.01
graphExamples0.000.010.02
graphNEL-class000
inEdges0.010.000.01
leaves0.050.000.05
listEdges0.020.000.02
matrix2Graph0.010.000.01
mostEdges000
numNoEdges000
pancrCaIni0.210.020.22
randomEGraph000
randomGraph0.010.000.02
randomNodeGraph000
removeEdge000
removeNode000
renderInfo-class000
reverseEdgeDirections0.010.000.02
simpleEdge-class000
standardLabeling0.060.000.06
subGraph000
toDotR-methods0.040.000.03
ugraph000
validGraph000

graph.Rcheck/examples_x64/graph-Ex.timings

nameusersystemelapsed
DFS0.030.010.05
IMCA0.190.050.24
MAPKsig0.170.000.17
MultiGraph-class0.160.000.16
acc-methods000
addEdge0.060.000.06
addNode000
adj-methods000
adjacencyMatrix0.020.000.02
apoptosisGraph0.010.000.01
attrData-class000
aveNumEdges000
biocRepos0.000.020.02
boundary000
calcProb000
calcSumProb000
clearNode0.020.000.01
clusterGraph-class0.010.000.02
clusteringCoefficient-methods0.050.000.05
combineNodes0.080.000.08
distGraph-class000
duplicatedEdges000
edgeMatrix000
edgeSets0.030.010.04
edgeWeights0.020.000.02
fromGXL-methods0.170.000.17
graph-class0.010.000.02
graph2SparseM0.100.000.09
graphAM-class000
graphBAM-class0.030.000.03
graphExamples000
graphNEL-class000
inEdges000
leaves0.070.000.06
listEdges000
matrix2Graph0.010.020.03
mostEdges000
numNoEdges000
pancrCaIni0.240.000.23
randomEGraph0.000.010.02
randomGraph000
randomNodeGraph000
removeEdge0.010.000.02
removeNode000
renderInfo-class000
reverseEdgeDirections0.020.000.01
simpleEdge-class000
standardLabeling0.040.020.06
subGraph000
toDotR-methods0.000.020.02
ugraph0.020.000.01
validGraph000