Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-08-04 15:05:39 -0400 (Wed, 04 Aug 2021).

CHECK results for flowUtils on tokay2

To the developers/maintainers of the flowUtils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowUtils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 666/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowUtils 1.56.0  (landing page)
Josef Spidlen
Snapshot Date: 2021-08-03 04:50:12 -0400 (Tue, 03 Aug 2021)
URL: https://git.bioconductor.org/packages/flowUtils
Branch: RELEASE_3_13
Last Commit: ad93cd2
Last Changed Date: 2021-05-19 11:38:23 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: flowUtils
Version: 1.56.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowUtils.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowUtils_1.56.0.tar.gz
StartedAt: 2021-08-03 23:36:00 -0400 (Tue, 03 Aug 2021)
EndedAt: 2021-08-03 23:37:45 -0400 (Tue, 03 Aug 2021)
EllapsedTime: 105.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: flowUtils.Rcheck
Warnings: 2

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowUtils.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings flowUtils_1.56.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowUtils.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '1.56.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:

  Warning: '.local' is deprecated.
  Warning: '.local' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x64' ... WARNING
Found the following significant warnings:

  Warning: '.local' is deprecated.
  Warning: '.local' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/flowUtils.Rcheck/00check.log'
for details.



Installation output

flowUtils.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowUtils_1.56.0.tar.gz && rm -rf flowUtils.buildbin-libdir && mkdir flowUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowUtils.buildbin-libdir flowUtils_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowUtils_1.56.0.zip && rm flowUtils_1.56.0.tar.gz flowUtils_1.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 84762  100 84762    0     0   523k      0 --:--:-- --:--:-- --:--:--  527k

install for i386

* installing *source* package 'flowUtils' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** help
*** installing help indices
  converting help for package 'flowUtils'
    finding HTML links ... done
    flowUtil-package                        html  
    read.gatingML                           html  
    testGatingMLCompliance                  html  
    write.gatingML                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package can be loaded from final location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowUtils' ...
** testing if installed package can be loaded
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
* MD5 sums
packaged installation of 'flowUtils' as flowUtils_1.56.0.zip
* DONE (flowUtils)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'flowUtils' successfully unpacked and MD5 sums checked

Tests output


Example timings

flowUtils.Rcheck/examples_i386/flowUtils-Ex.timings

nameusersystemelapsed
read.gatingML0.590.010.75
testGatingMLCompliance000
write.gatingML1.130.051.17

flowUtils.Rcheck/examples_x64/flowUtils-Ex.timings

nameusersystemelapsed
read.gatingML0.470.000.47
testGatingMLCompliance000
write.gatingML0.990.031.02