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This page was generated on 2021-07-21 15:05:39 -0400 (Wed, 21 Jul 2021).

INSTALL results for SplicingGraphs on tokay2

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raw results

Package 1830/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SplicingGraphs 1.32.0  (landing page)
H. Pag├Ęs
Snapshot Date: 2021-07-20 04:50:13 -0400 (Tue, 20 Jul 2021)
URL: https://git.bioconductor.org/packages/SplicingGraphs
Branch: RELEASE_3_13
Last Commit: 6066f74
Last Changed Date: 2021-05-19 11:58:48 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SplicingGraphs
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SplicingGraphs_1.32.0.tar.gz && rm -rf SplicingGraphs.buildbin-libdir && mkdir SplicingGraphs.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SplicingGraphs.buildbin-libdir SplicingGraphs_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SplicingGraphs_1.32.0.zip && rm SplicingGraphs_1.32.0.tar.gz SplicingGraphs_1.32.0.zip
StartedAt: 2021-07-20 11:17:23 -0400 (Tue, 20 Jul 2021)
EndedAt: 2021-07-20 11:18:51 -0400 (Tue, 20 Jul 2021)
EllapsedTime: 88.3 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SplicingGraphs_1.32.0.tar.gz && rm -rf SplicingGraphs.buildbin-libdir && mkdir SplicingGraphs.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SplicingGraphs.buildbin-libdir SplicingGraphs_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SplicingGraphs_1.32.0.zip && rm SplicingGraphs_1.32.0.tar.gz SplicingGraphs_1.32.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 45.5M    1  885k    0     0  2226k      0  0:00:20 --:--:--  0:00:20 2225k
 10 45.5M   10 5001k    0     0  3567k      0  0:00:13  0:00:01  0:00:12 3567k
 23 45.5M   23 10.9M    0     0  4675k      0  0:00:09  0:00:02  0:00:07 4675k
 42 45.5M   42 19.2M    0     0  5805k      0  0:00:08  0:00:03  0:00:05 5805k
 64 45.5M   64 29.6M    0     0  6901k      0  0:00:06  0:00:04  0:00:02 6902k
 89 45.5M   89 40.7M    0     0  7743k      0  0:00:06  0:00:05  0:00:01 8182k
100 45.5M  100 45.5M    0     0  8051k      0  0:00:05  0:00:05 --:--:-- 9481k

install for i386

* installing *source* package 'SplicingGraphs' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::from' by 'Rgraphviz::from' when loading 'SplicingGraphs'
Warning: replacing previous import 'IRanges::to' by 'Rgraphviz::to' when loading 'SplicingGraphs'
** help
*** installing help indices
  converting help for package 'SplicingGraphs'
    finding HTML links ... done
    SplicingGraphs-class                    html  
REDIRECT:topic	 class:GeneModel -> SplicingGraphs-class.html [ FAIL ]
REDIRECT:topic	 class:SplicingGraphs -> SplicingGraphs-class.html [ FAIL ]
REDIRECT:topic	 isCircular<-,GeneModel-method -> SplicingGraphs-class.html [ FAIL ]
REDIRECT:topic	 isCircular<-,SplicingGraphs-method -> SplicingGraphs-class.html [ FAIL ]
    SplicingGraphs-package                  html  
    TSPCsg                                  html  
    assignReads                             html  
    bubbles-methods                         html  
    countReads-methods                      html  
    plotTranscripts-methods                 html  
    rsgedgesByGene-methods                  html  
    sgedges-methods                         html  
    sgedgesByGene-methods                   html  
    sgraph-methods                          html  
    toy_data                                html  
    txpath-methods                          html  
REDIRECT:topic	 txweight<- -> txpath-methods.html [ FAIL ]
REDIRECT:topic	 txweight<-,SplicingGraphs-method -> txpath-methods.html [ FAIL ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::from' by 'Rgraphviz::from' when loading 'SplicingGraphs'
Warning: replacing previous import 'IRanges::to' by 'Rgraphviz::to' when loading 'SplicingGraphs'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::from' by 'Rgraphviz::from' when loading 'SplicingGraphs'
Warning: replacing previous import 'IRanges::to' by 'Rgraphviz::to' when loading 'SplicingGraphs'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SplicingGraphs' ...
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::from' by 'Rgraphviz::from' when loading 'SplicingGraphs'
Warning: replacing previous import 'IRanges::to' by 'Rgraphviz::to' when loading 'SplicingGraphs'
* MD5 sums
packaged installation of 'SplicingGraphs' as SplicingGraphs_1.32.0.zip
* DONE (SplicingGraphs)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SplicingGraphs' successfully unpacked and MD5 sums checked