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This page was generated on 2021-06-17 02:39:22 -0400 (Thu, 17 Jun 2021).

BUILD BIN results for Rtreemix on machv2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rtreemix.git to
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raw results

Package 1651/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rtreemix 1.54.0  (landing page)
Jasmina Bogojeska
Snapshot Date: 2021-06-15 06:50:12 -0400 (Tue, 15 Jun 2021)
URL: https://git.bioconductor.org/packages/Rtreemix
Branch: RELEASE_3_13
Last Commit: 5821181
Last Changed Date: 2021-05-19 11:39:55 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Rtreemix
Version: 1.54.0
Command: rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rtreemix_1.54.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Rtreemix.buildbin-libdir
StartedAt: 2021-06-16 03:14:00 -0400 (Wed, 16 Jun 2021)
EndedAt: 2021-06-16 03:15:19 -0400 (Wed, 16 Jun 2021)
EllapsedTime: 78.8 seconds
RetCode: 0
Status:   OK  
PackageFile: Rtreemix_1.54.0.tgz
PackageFileSize: 856.2 KiB

Command output

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###
### Running command:
###
###   rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rtreemix_1.54.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Rtreemix.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Rtreemix.buildbin-libdir Rtreemix_1.54.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Rtreemix’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rtreemix.cc -o Rtreemix.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rtreemix_patch.cc -o Rtreemix_patch.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c WrapGraph.cc -o WrapGraph.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cfunctions.cc -o cfunctions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c kmeans.cc -o kmeans.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c max_weight_branch.cc -o max_weight_branch.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mtree.cc -o mtree.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c mtreemix.cc -o mtreemix.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c replaceleda.cc -o replaceleda.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Rtreemix.so Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/Rtreemix.buildbin-libdir/00LOCK-Rtreemix/00new/Rtreemix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rtreemix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Rtreemix.buildbin-libdir/Rtreemix/libs/Rtreemix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs/Rtreemix.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs/Rtreemix.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "Rtreemix.buildbin-libdir/Rtreemix/libs/Rtreemix.so"