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This page was generated on 2021-08-02 15:05:19 -0400 (Mon, 02 Aug 2021).

BUILD BIN results for MineICA on tokay2

To the developers/maintainers of the MineICA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MineICA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1138/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MineICA 1.32.0  (landing page)
Anne Biton
Snapshot Date: 2021-08-01 04:50:10 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/MineICA
Branch: RELEASE_3_13
Last Commit: def84c7
Last Changed Date: 2021-05-19 11:57:33 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: MineICA
Version: 1.32.0
Command: rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.32.0.tar.gz
StartedAt: 2021-08-02 10:21:50 -0400 (Mon, 02 Aug 2021)
EndedAt: 2021-08-02 10:23:02 -0400 (Mon, 02 Aug 2021)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:   OK  
PackageFile: MineICA_1.32.0.zip
PackageFileSize: 2.395 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.32.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'MineICA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sampleNames<-' in package 'MineICA'
** help
*** installing help indices
  converting help for package 'MineICA'
    finding HTML links ... done
    A                                       html  
REDIRECT:topic	 A<- -> A.html [ FAIL ]
REDIRECT:topic	 S<- -> A.html [ FAIL ]
REDIRECT:topic	 SByGene<- -> A.html [ FAIL ]
REDIRECT:topic	 setA<- -> A.html [ FAIL ]
REDIRECT:topic	 setS<- -> A.html [ FAIL ]
REDIRECT:topic	 setSByGene<- -> A.html [ FAIL ]
REDIRECT:topic	 A<-,IcaSet,data.frame-method -> A.html [ FAIL ]
REDIRECT:topic	 A<-,IcaSet-method -> A.html [ FAIL ]
REDIRECT:topic	 S<-,IcaSet,data.frame-method -> A.html [ FAIL ]
REDIRECT:topic	 S<-,IcaSet-method -> A.html [ FAIL ]
REDIRECT:topic	 SByGene<-,IcaSet,data.frame-method -> A.html [ FAIL ]
REDIRECT:topic	 SByGene<-,IcaSet-method -> A.html [ FAIL ]
    Alist                                   html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpkB0Jsm/R.INSTALL6eac528bffb/MineICA/man/Alist.Rd:26: missing link 'class-IcaSet'
    Slist                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpkB0Jsm/R.INSTALL6eac528bffb/MineICA/man/Slist.Rd:28: missing link 'class-IcaSet'
    addGenesToGoReport                      html  
    annot2Color                             html  
    annotCarbayo                            html  
    annotFeatures                           html  
    annotFeaturesComp                       html  
    annotFeaturesWithBiomaRt                html  
    annotInGene                             html  
    annotReciprocal                         html  
    buildIcaSet                             html  
    buildMineICAParams                      html  
    build_sortHeatmap                       html  
    class-IcaSet                            html  
REDIRECT:topic	 class:IcaSet -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 [<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 [<-,IcaSet,ANY,ANY,ANY,ANY-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 [<-,IcaSet,ANY,ANY,ANY-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 [<-,IcaSet,ANY,ANY-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 organism<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 organism<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 mart<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 mart<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 mart<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipVersion<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipVersion<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipVersion<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 indComp<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 compNames<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 witGenes<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 refSamples<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 refSamples<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 refSamples<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 typeID<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 typeID<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 typeID<-,IcaSet,list-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipManu<- -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipManu<-,IcaSet-method -> class-IcaSet.html [ FAIL ]
REDIRECT:topic	 chipManu<-,IcaSet,character-method -> class-IcaSet.html [ FAIL ]
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpkB0Jsm/R.INSTALL6eac528bffb/MineICA/man/class-IcaSet.Rd:321: missing link 'class-IcaSet'
    class-MineICAParams                     html  
REDIRECT:topic	 class:MineICAParams -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Sfile<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Sfile<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 datfile<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annotfile<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 genesPath<-,ANY-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 resPath<-,ANY-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 selCutoff<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 pvalCutoff<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Afile<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Sfile<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annot2col<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 datfile<-,MineICAParams-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 datfile<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Afile<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 Afile<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annotfile<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annotfile<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 resPath<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 resPath<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 genesPath<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 genesPath<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annot2col<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 annot2col<-,MineICAParams,character-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 pvalCutoff<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 pvalCutoff<-,MineICAParams,numeric-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 selCutoff<- -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 selCutoff<-,MineICAParams,numeric-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 [<-,MineICAParams,ANY,ANY,ANY,ANY-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 [<-,MineICAParams,ANY,ANY,ANY-method -> class-MineICAParams.html [ FAIL ]
REDIRECT:topic	 [<-,MineICAParams,ANY,ANY-method -> class-MineICAParams.html [ FAIL ]
    clusVarAnalysis                         html  
    clusterFastICARuns                      html  
    clusterSamplesByComp                    html  
    clusterSamplesByComp_multiple           html  
    compareAn                               html  
    compareAn2graphfile                     html  
    compareGenes                            html  
    cor2An                                  html  
    correl2Comp                             html  
    dat                                     html  
REDIRECT:topic	 dat<- -> dat.html [ FAIL ]
REDIRECT:topic	 dat<-,IcaSet-method -> dat.html [ FAIL ]
REDIRECT:topic	 dat<-,IcaSet,matrix-method -> dat.html [ FAIL ]
REDIRECT:topic	 datByGene<- -> dat.html [ FAIL ]
REDIRECT:topic	 datByGene<-,IcaSet-method -> dat.html [ FAIL ]
REDIRECT:topic	 datByGene<-,IcaSet,matrix-method -> dat.html [ FAIL ]
    dataCarbayo                             html  
    doEnrichment                            html  
    getComp                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpkB0Jsm/R.INSTALL6eac528bffb/MineICA/man/getComp.Rd:33: missing link 'class-IcaSet'
    getProj                                 html  
    getSdExpr                               html  
    hgOver                                  html  
    hypergeoAn                              html  
    icaSetCarbayo                           html  
    icaSetKim                               html  
    icaSetRiester                           html  
    icaSetStransky                          html  
    indComp                                 html  
REDIRECT:topic	 indComp<- -> indComp.html [ FAIL ]
REDIRECT:topic	 indComp<-,IcaSet-method -> indComp.html [ FAIL ]
REDIRECT:topic	 compNames<- -> indComp.html [ FAIL ]
REDIRECT:topic	 compNames<-,IcaSet-method -> indComp.html [ FAIL ]
REDIRECT:topic	 witGenes<- -> indComp.html [ FAIL ]
REDIRECT:topic	 witGenes<-,IcaSet-method -> indComp.html [ FAIL ]
    mergeGostatsResults                     html  
    nbOccByGeneInComp                       html  
    nbOccInComp                             html  
    nbOccInComp_simple                      html  
    nodeAttrs                               html  
    plotAllMix                              html  
    plotCorGraph                            html  
    plotDens2classInComp_plotOnly           html  
    plotDensAllAnnotInAllComp               html  
    plotDensOneAnnotInAllComp               html  
    plotMclust                              html  
    plotMix                                 html  
    plotPosAnnotInComp                      html  
    plotPosOneAnnotInComp_ggplot            html  
    plotPosOneAnnotLevInComp_ggplot         html  
    plotPosSamplesInComp                    html  
    plot_heatmapsOnSel                      html  
    qualVarAnalysis                         html  
    quantVarAnalysis                        html  
    readA                                   html  
    readS                                   html  
    relativePath                            html  
    runAn                                   html  
    runCompareIcaSets                       html  
    runEnrich                               html  
    runICA                                  html  
    selectContrib                           html  
    selectFeatures_IQR                      html  
    selectWitnessGenes                      html  
    wilcoxOrKruskalOnA                      html  
    writeGenes                              html  
    writeGostatsHtmltable                   html  
    writeHtmlResTestsByAnnot                html  
    writeProjByComp                         html  
    writeRnkFiles                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MineICA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MineICA' as MineICA_1.32.0.zip
* DONE (MineICA)