Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-07-23 15:06:06 -0400 (Fri, 23 Jul 2021).

CHECK results for GraphAT on tokay2

To the developers/maintainers of the GraphAT package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GraphAT.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 807/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GraphAT 1.64.0  (landing page)
Thomas LaFramboise
Snapshot Date: 2021-07-22 04:50:13 -0400 (Thu, 22 Jul 2021)
URL: https://git.bioconductor.org/packages/GraphAT
Branch: RELEASE_3_13
Last Commit: cf236c4
Last Changed Date: 2021-05-19 11:34:36 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GraphAT
Version: 1.64.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GraphAT.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings GraphAT_1.64.0.tar.gz
StartedAt: 2021-07-23 00:17:47 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 00:19:26 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 99.2 seconds
RetCode: 0
Status:   OK  
CheckDir: GraphAT.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GraphAT.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings GraphAT_1.64.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/GraphAT.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.64.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'graph' 'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/GraphAT.Rcheck/00check.log'
for details.



Installation output

GraphAT.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GraphAT_1.64.0.tar.gz && rm -rf GraphAT.buildbin-libdir && mkdir GraphAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GraphAT.buildbin-libdir GraphAT_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GraphAT_1.64.0.zip && rm GraphAT_1.64.0.tar.gz GraphAT_1.64.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 37 1928k   37  723k    0     0  3319k      0 --:--:-- --:--:-- --:--:-- 3320k
100 1928k  100 1928k    0     0  6529k      0 --:--:-- --:--:-- --:--:-- 6537k

install for i386

* installing *source* package 'GraphAT' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GraphAT'
    finding HTML links ... done
    Phenoclusters                           html  
    causton                                 html  
    cellcycle                               html  
    clust2Mat                               html  
    depthmat                                html  
    getpvalue                               html  
    giaever                                 html  
    mRNAclusters                            html  
    makeClustM                              html  
    mat2UndirG                              html  
    permPower                               html  
    perms                                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GraphAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GraphAT' as GraphAT_1.64.0.zip
* DONE (GraphAT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GraphAT' successfully unpacked and MD5 sums checked

Tests output


Example timings

GraphAT.Rcheck/examples_i386/GraphAT-Ex.timings

nameusersystemelapsed
Phenoclusters0.980.151.13
causton0.240.040.28
cellcycle0.180.060.23
clust2Mat000
depthmat0.290.050.34
getpvalue000
giaever0.390.030.43
mRNAclusters0.710.170.87
makeClustM000
mat2UndirG0.010.000.01
permPower0.460.090.55
perms000

GraphAT.Rcheck/examples_x64/GraphAT-Ex.timings

nameusersystemelapsed
Phenoclusters0.860.130.99
causton0.190.040.23
cellcycle0.160.050.20
clust2Mat000
depthmat0.190.080.27
getpvalue000
giaever0.280.000.28
mRNAclusters0.390.140.53
makeClustM000
mat2UndirG0.010.000.01
permPower0.580.060.65
perms000