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INSTALL report for GeneAnswers on riesling1

This page was generated on 2021-05-10 12:14:10 -0400 (Mon, 10 May 2021).

To the developers/maintainers of the GeneAnswers package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 700/2016HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneAnswers 2.33.0  (landing page)
Lei Huang and Gang Feng
Snapshot Date: 2021-05-09 14:50:05 -0400 (Sun, 09 May 2021)
URL: https://git.bioconductor.org/packages/GeneAnswers
Branch: master
Last Commit: 02ac664
Last Changed Date: 2021-03-01 21:20:41 -0400 (Mon, 01 Mar 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
riesling1Windows Server 2019 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: GeneAnswers
Version: 2.33.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAnswers_2.33.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.33.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.33.0.zip && rm GeneAnswers_2.33.0.tar.gz GeneAnswers_2.33.0.zip
StartedAt: 2021-05-09 17:16:45 -0400 (Sun, 09 May 2021)
EndedAt: 2021-05-09 17:19:12 -0400 (Sun, 09 May 2021)
EllapsedTime: 146.9 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAnswers_2.33.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.33.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.33.0.zip && rm GeneAnswers_2.33.0.tar.gz GeneAnswers_2.33.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 20 32.6M   20 6804k    0     0  15.6M      0  0:00:02 --:--:--  0:00:02 15.5M
100 32.6M  100 32.6M    0     0  26.2M      0  0:00:01  0:00:01 --:--:-- 26.2M

install for i386

* installing *source* package 'GeneAnswers' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** help
*** installing help indices
  converting help for package 'GeneAnswers'
    finding HTML links ... done
    DO                                      html  
    DOLite                                  html  
    DOLiteTerm                              html  
    DmIALite                                html  
    GeneAnswers-class                       html  
REDIRECT:topic	 class:GeneAnswers -> GeneAnswers-class.html [ FAIL ]
    GeneAnswers-package                     html  
    HsIALite                                html  
    MmIALite                                html  
    RnIALite                                html  
    buildNet                                html  
    caBIO.PATHGenes                         html  
    caBIO2entrez                            html  
    categoryNet                             html  
    chartPlots                              html  
    drawTable                               html  
    entrez2caBIO                            html  
    geneAnnotationHeatmap                   html  
    geneAnswersBuilder                      html  
    geneAnswersChartPlots                   html  
    geneAnswersConceptNet                   html  
    geneAnswersConceptRelation              html  
    geneAnswersConcepts                     html  
    geneAnswersHeatmap                      html  
    geneAnswersHomoMapping                  html  
    geneAnswersReadable                     html  
    geneAnswersSort                         html  
    geneConceptNet                          html  
    getCategoryList                         html  
    getCategoryTerms                        html  
    getConceptTable                         html  
    getConnectedGraph                       html  
    getDOLiteTerms                          html  
    getGOList                               html  
    getHomoGeneIDs                          html  
    getListGIF                              html  
    getMultiLayerGraphIDs                   html  
    getNextGOIDs                            html  
    getPATHList                             html  
    getPATHTerms                            html  
    getREACTOMEPATHList                     html  
    getREACTOMEPATHTerms                    html  
    getSingleLayerGraphIDs                  html  
    getSymbols                              html  
    getTotalGeneNumber                      html  
    getcaBIOPATHList                        html  
    getcaBIOPATHTerms                       html  
    groupReport                             html  
    humanExpr                               html  
    humanGeneInput                          html  
    mouseExpr                               html  
    mouseGeneInput                          html  
    sampleGroupsData                        html  
    searchEntrez                            html  
    topCategory                             html  
    topCategoryGenes                        html  
    topDOLITE                               html  
    topDOLITEGenes                          html  
    topGO                                   html  
    topGOGenes                              html  
    topPATH                                 html  
    topPATHGenes                            html  
    topREACTOME.PATH                        html  
    topREACTOME.PATHGenes                   html  
    topcaBIO.PATH                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneAnswers' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
* MD5 sums
packaged installation of 'GeneAnswers' as GeneAnswers_2.33.0.zip
* DONE (GeneAnswers)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'GeneAnswers' successfully unpacked and MD5 sums checked