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This page was generated on 2021-06-17 02:38:16 -0400 (Thu, 17 Jun 2021).

INSTALL results for CellNOptR on nebbiolo1

To the developers/maintainers of the CellNOptR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 266/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.38.0  (landing page)
A.Gabor
Snapshot Date: 2021-06-15 06:50:12 -0400 (Tue, 15 Jun 2021)
URL: https://git.bioconductor.org/packages/CellNOptR
Branch: RELEASE_3_13
Last Commit: 8e211e0
Last Changed Date: 2021-05-19 11:50:40 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: CellNOptR
Version: 1.38.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CellNOptR
StartedAt: 2021-06-15 08:08:04 -0400 (Tue, 15 Jun 2021)
EndedAt: 2021-06-15 08:08:17 -0400 (Tue, 15 Jun 2021)
EllapsedTime: 13.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CellNOptR
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘CellNOptR’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c getFit.c -o getFit.o
getFit.c: In function ‘getFit’:
getFit.c:47:6: warning: unused variable ‘nReacs’ [-Wunused-variable]
   47 |  int nReacs = INTEGER(nReacs_in)[0];
      |      ^~~~~~
getFit.c:42:6: warning: unused variable ‘selCounter’ [-Wunused-variable]
   42 |  int selCounter = 0;
      |      ^~~~~~~~~~
getFit.c:41:6: warning: unused variable ‘selection’ [-Wunused-variable]
   41 |  int selection[40];
      |      ^~~~~~~~~
getFit.c:40:6: warning: unused variable ‘or_max’ [-Wunused-variable]
   40 |  int or_max = 0;
      |      ^~~~~~
getFit.c:39:6: warning: unused variable ‘curr_max’ [-Wunused-variable]
   39 |  int curr_max = 0;
      |      ^~~~~~~~
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c simulatorT1.c -o simulatorT1.o
simulatorT1.c: In function ‘simulatorT1’:
simulatorT1.c:502:20: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  502 |        if (MA[i][j]<0.95 & MA[i][j]>0.05)  // actually we could check if they are exatly 0 or 1
      |            ~~~~~~~~^~~~~
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I./include  -fpic  -g -O2  -Wall -c simulatorTN.c -o simulatorTN.o
gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)