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This page was generated on 2021-06-23 15:05:51 -0400 (Wed, 23 Jun 2021).

BUILD results for BiocOncoTK on machv2

To the developers/maintainers of the BiocOncoTK package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 166/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.12.0  (landing page)
VJ Carey
Snapshot Date: 2021-06-22 04:50:12 -0400 (Tue, 22 Jun 2021)
URL: https://git.bioconductor.org/packages/BiocOncoTK
Branch: RELEASE_3_13
Last Commit: a7ba509
Last Changed Date: 2021-05-19 12:35:35 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: BiocOncoTK
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2021-06-22 10:33:58 -0400 (Tue, 22 Jun 2021)
EndedAt: 2021-06-22 10:36:00 -0400 (Tue, 22 Jun 2021)
EllapsedTime: 121.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
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* checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK
* preparing ‘BiocOncoTK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocOncoTK.Rmd’ using rmarkdown
Loading required package: ontologyIndex
Quitting from lines 690-695 (BiocOncoTK.Rmd) 
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
Bad request
--- failed re-building ‘BiocOncoTK.Rmd’

--- re-building ‘curatedMSIData.Rmd’ using rmarkdown
--- finished re-building ‘curatedMSIData.Rmd’

--- re-building ‘maptcga.Rmd’ using rmarkdown
--- finished re-building ‘maptcga.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocOncoTK.Rmd’

Error: Vignette re-building failed.
Execution halted