Back to Multiple platform build/check report for BioC 3.12
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for celaref on tokay1

This page was generated on 2021-05-05 12:11:28 -0400 (Wed, 05 May 2021).

To the developers/maintainers of the celaref package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 247/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
celaref 1.8.0  (landing page)
Sarah Williams
Snapshot Date: 2021-05-04 14:50:13 -0400 (Tue, 04 May 2021)
URL: https://git.bioconductor.org/packages/celaref
Branch: RELEASE_3_12
Last Commit: 446dc60
Last Changed Date: 2020-10-27 11:37:46 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: celaref
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/celaref_1.8.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL celaref_1.8.0.zip && rm celaref_1.8.0.tar.gz celaref_1.8.0.zip
StartedAt: 2021-05-04 18:47:19 -0400 (Tue, 04 May 2021)
EndedAt: 2021-05-04 18:48:54 -0400 (Tue, 04 May 2021)
EllapsedTime: 95.8 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/celaref_1.8.0.tar.gz && rm -rf celaref.buildbin-libdir && mkdir celaref.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celaref.buildbin-libdir celaref_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL celaref_1.8.0.zip && rm celaref_1.8.0.tar.gz celaref_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1151k  100 1151k    0     0  20.7M      0 --:--:-- --:--:-- --:--:-- 21.2M

install for i386

* installing *source* package 'celaref' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'celaref'
    finding HTML links ... done
    contrast_each_group_to_the_rest         html  
    contrast_each_group_to_the_rest_for_norm_ma_with_limma
                                            html  
    contrast_the_group_to_the_rest          html  
    contrast_the_group_to_the_rest_with_limma_for_microarray
                                            html  
    convert_se_gene_ids                     html  
    de_table.demo_query                     html  
    de_table.demo_ref                       html  
    demo_cell_info_table                    html  
    demo_counts_matrix                      html  
    demo_gene_info_table                    html  
    demo_microarray_expr                    html  
    demo_microarray_sample_sheet            html  
    demo_query_se                           html  
    demo_ref_se                             html  
    find_within_match_differences           html  
    get_counts_index                        html  
    get_inner_or_outer_ci                   html  
    get_limma_top_table_with_ci             html  
    get_matched_stepped_mwtest_res_table    html  
    get_ranking_and_test_results            html  
    get_rankstat_table                      html  
    get_reciprocal_matches                  html  
    get_stepped_pvals_str                   html  
    get_the_up_genes_for_all_possible_groups
                                            html  
    get_the_up_genes_for_group              html  
    get_vs_random_pval                      html  
    load_dataset_10Xdata                    html  
    load_se_from_tables                     html  
    make_ranking_violin_plot                html  
    make_ref_similarity_names               html  
    make_ref_similarity_names_for_group     html  
    run_pair_test_stats                     html  
    subset_cells_by_group                   html  
    subset_se_cells_for_group_test          html  
    trim_small_groups_and_low_expression_genes
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'celaref' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'celaref' as celaref_1.8.0.zip
* DONE (celaref)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'celaref' successfully unpacked and MD5 sums checked