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INSTALL report for bcSeq on malbec1

This page was generated on 2021-05-05 12:09:28 -0400 (Wed, 05 May 2021).

To the developers/maintainers of the bcSeq package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 131/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bcSeq 1.12.0  (landing page)
Jiaxing Lin
Snapshot Date: 2021-05-04 14:50:13 -0400 (Tue, 04 May 2021)
URL: https://git.bioconductor.org/packages/bcSeq
Branch: RELEASE_3_12
Last Commit: 6fc7a71
Last Changed Date: 2020-10-27 11:30:03 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: bcSeq
Version: 1.12.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bcSeq
StartedAt: 2021-05-04 16:12:54 -0400 (Tue, 04 May 2021)
EndedAt: 2021-05-04 16:13:42 -0400 (Tue, 04 May 2021)
EllapsedTime: 47.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bcSeq
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘bcSeq’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c CRISPR_matching.cpp -o CRISPR_matching.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c Trie_edit.cpp -o Trie_edit.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c Trie_hamming.cpp -o Trie_hamming.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c Trie_util.cpp -o Trie_util.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c alignment.cpp -o alignment.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c trimRead.cpp -o trimRead.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/Matrix/include' -I/usr/local/include  -pthread -fpic  -g -O2  -Wall -c uniqueBar.cpp -o uniqueBar.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o bcSeq.so CRISPR_matching.o RcppExports.o Trie_edit.o Trie_hamming.o Trie_util.o alignment.o init.o trimRead.o uniqueBar.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-bcSeq/00new/bcSeq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bcSeq)