Back to Multiple platform build/check report for BioC 3.12
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for AMARETTO on tokay1

This page was generated on 2021-05-05 12:11:15 -0400 (Wed, 05 May 2021).

To the developers/maintainers of the AMARETTO package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 51/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AMARETTO 1.6.0  (landing page)
Olivier Gevaert
Snapshot Date: 2021-05-04 14:50:13 -0400 (Tue, 04 May 2021)
URL: https://git.bioconductor.org/packages/AMARETTO
Branch: RELEASE_3_12
Last Commit: 0deca3f
Last Changed Date: 2020-10-27 11:43:56 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: AMARETTO
Version: 1.6.0
Command: rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.6.0.tar.gz
StartedAt: 2021-05-05 08:28:44 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 08:29:45 -0400 (Wed, 05 May 2021)
EllapsedTime: 60.8 seconds
RetCode: 0
Status:   OK   
PackageFile: AMARETTO_1.6.0.zip
PackageFileSize: 3.437 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf AMARETTO.buildbin-libdir && mkdir AMARETTO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AMARETTO.buildbin-libdir AMARETTO_1.6.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'AMARETTO' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AMARETTO'
    finding HTML links ... done
    AMARETTO_CreateModuleData               html  
    AMARETTO_CreateRegulatorPrograms        html  
    AMARETTO_Download                       html  
    AMARETTO_EvaluateTestSet                html  
    AMARETTO_ExportResults                  html  
    AMARETTO_HTMLreport                     html  
    AMARETTO_Initialize                     html  
    AMARETTO_LarsenBased                    html  
    AMARETTO_LearnRegulatoryProgramsLarsen
                                            html  
    AMARETTO_Preprocess                     html  
    AMARETTO_ReassignGenesToClusters        html  
    AMARETTO_Run                            html  
    AMARETTO_VisualizeModule                html  
    BatchData                               html  
    Beta.NA                                 html  
    ComBat_NoFiles                          html  
    CreateRegulatorData                     html  
    Driver_Genes                            html  
    FindTranscriptionallyPredictive_CNV     html  
    GeneSetDescription                      html  
    GmtFromModules                          html  
    HyperGTestGeneEnrichment                html  
    L                                       html  
    Lambda_Sequence                         html  
    MsigdbMapping                           html  
    Preprocess_MAdata                       html  
    ProcessedDataLIHC                       html  
    Save_CancerSite                         html  
    TCGA_BatchCorrection_MolecularData      html  
    TCGA_GENERIC_BatchCorrection            html  
    TCGA_GENERIC_CheckBatchEffect           html  
    TCGA_GENERIC_CleanUpSampleNames         html  
    TCGA_GENERIC_GetSampleGroups            html  
    TCGA_GENERIC_MergeData                  html  
    TCGA_Load_GISTICdata                    html  
    TCGA_Load_MolecularData                 html  
    aprior                                  html  
    bprior                                  html  
    build.design                            html  
    cacheResource                           html  
    computeGisticURL                        html  
    design.mat                              html  
    filter.absent                           html  
    geneFiltering                           html  
    get_firehoseData                        html  
    int.eprior                              html  
    it.sol                                  html  
    list.batch                              html  
    plot_run_history                        html  
    postmean                                html  
    postvar                                 html  
    printf                                  html  
    readGMT                                 html  
    read_gct                                html  
    trim.dat                                html  
    write_gct                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AMARETTO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AMARETTO' as AMARETTO_1.6.0.zip
* DONE (AMARETTO)