CHANGES IN VERSION 1.3.3 ------------------------ + plotPromoters is deprecated + Implemented three new functions - plotPCA: performs principal component analysis - plotHeatmap: heatmap visualization - integrateProactiv: integrate different proActiv runs CHANGES IN VERSION 1.1.22 ------------------------ + Update package-down site + Update NEWS for Bioconductor 3.13 CHANGES IN VERSION 1.1.18 ------------------------ + Gene expression data is now stored in the assays of the summarizedExperiment object returned by proActiv to facilitate easier filtering of the summarizedExperiment object. The metadata slot is now empty. + Plotting promoter activity: Implementation of boxplotPromoters function to plot boxplots of absolute promoter activity, relative promoter activity, and gene expression. + Identification of alternative promoters: Implementation of getAlternativePromoters, used to identify promoters that may exhibit alternative usage. CHANGES IN VERSION 1.1.15 ------------------------ + Implement getAlternativePromoters for identifying alternative promoters + Implement boxplotPromoters for visualizing promoter usage CHANGES IN VERSION 1.1.6 ------------------------ + Enforce condition vector to following naming conventions CHANGES IN VERSION 1.0.0 ------------------------ + Released with Bioconductor 3.12 CHANGES IN VERSION 0.99.0 ------------------------- + Submitted to Bioconductor