netDx 1.5.3 ================== * Moved RCy3, scater, clusterExperiment and netSmooth to "Suggests" to reduce dependency burden * Sped up vignettes by limiting all to binary classification and limiting number of layers * Removed TL;DR from vignettes as usefulness in question but maintainance high. Developers notes: ------------------- * Added Dockerfile and Github Actions for automated testing * GHA auto-generates a Docker image with netDx which gets pushed to shraddhapai/netdx_devenv netDx 1.5.2 ================== * Added wrapper functions for ease-of-use. Includes: * getResults() to plot results of running the predictor * getPSN() for creating and visualizing integrated PSN * confusionMatrix() to visualize confusion matrix * tSNEPlotter() to visualize tSNE of integrated PSN (doesn't require Cytoscape) * Added CITATION file with citations to netDx methods and software paper netDx 1.5.1 ================== * Adding support for Java 16. * Disabling CNV-based vignette to allow other three vignettes to run without causing build timeout on devel system netDx 1.1.4 ================== Changes: * New functionality to smooth mutations over interaction, starting from sparse somatic mutations * BiocFileCache usage update Changes in version 0.99.0 (2019-11-11) + Submitted to Bioconductor