CHANGES IN VERSION 1.13.9 ------------------------- CHANGES o Fix bug in plot_fusion where the upstream ideogram was incorrect. Ref https://github.com/stianlagstad/chimeraviz/issues/83 CHANGES IN VERSION 1.13.8 ------------------------- CHANGES o Support Aeron. Ref https://github.com/stianlagstad/chimeraviz/pull/81 CHANGES IN VERSION 1.13.7 ------------------------- CHANGES o Support SQUID. Ref https://github.com/stianlagstad/chimeraviz/pull/79 CHANGES IN VERSION 1.13.6 ------------------------- CHANGES o Change in plot_circle: Allow for mitochondria. Ref https://github.com/stianlagstad/chimeraviz/issues/80 and https://github.com/stianlagstad/chimeraviz/issues/18. Thank you to Philip Lijnzaad. CHANGES IN VERSION 1.13.5 ------------------------- CHANGES o Change in create_fusion_report: Create the report in the current working directory. Ref https://github.com/stianlagstad/chimeraviz/issues/66 CHANGES IN VERSION 1.13.4 ------------------------- CHANGES o Support ChimPipe. Ref https://github.com/stianlagstad/chimeraviz/pull/77 CHANGES IN VERSION 1.9.5 ------------------------- CHANGES o Allow calling plot_fusion without bam/bedfile. Ref https://github.com/stianlagstad/chimeraviz/issues/61 CHANGES IN VERSION 1.9.1 ------------------------- CHANGES o Fixed a bug in plot_circle where link widths were off. Ref https://github.com/stianlagstad/chimeraviz/issues/52 CHANGES IN VERSION 1.7.1 ------------------------- CHANGES o Introduced support for oncofuse. Ref https://github.com/stianlagstad/chimeraviz/issues/47 and https://github.com/stianlagstad/chimeraviz/pull/48/files. CHANGES IN VERSION 1.5.6 ------------------------- CHANGES o The interface for working with chimeraviz has changed to comply with https://github.com/jimhester/lintr. chimeraviz is the same as before, but methods have new names. CHANGES IN VERSION 1.5.1 ------------------------- NEW FEATURES o Added support for the mm10 genome. CHANGES IN VERSION 1.2.3 ------------------------- NEW FEATURES o Added the protein domain plot to show which protein domains are retained in the fusion. BUG FIXES o Fixed a bug in plotFusionReads where too many supporting reads would lead to an error.