affyQCReport

DOI: 10.18129/B9.bioc.affyQCReport    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

QC Report Generation for affyBatch objects

Bioconductor version: Release (3.13)

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Citation (from within R, enter citation("affyQCReport")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyQCReport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software
Version 1.70.0
In Bioconductor since BioC 1.7 (R-2.2) (15.5 years)
License LGPL (>= 2)
Depends Biobase(>= 1.13.16), affy, lattice
Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/affyQCReport
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyQCReport
Package Short Url https://bioconductor.org/packages/affyQCReport/
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