SCATEData

DOI: 10.18129/B9.bioc.SCATEData    

This is the development version of SCATEData; to use it, please install the devel version of Bioconductor.

Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)

Bioconductor version: Development (3.12)

SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.

Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] , Hongkai Ji [aut]

Maintainer: Wenpin Hou <wp.hou3 at gmail.com>

Citation (from within R, enter citation("SCATEData")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SCATEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCATEData")

 

HTML R Script 1. SCATEData package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExperimentHub
Version 0.99.5
License MIT + file LICENSE
Depends ExperimentHub, GenomicAlignments, GenomicRanges, base
Imports utils
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports https://github.com/Winnie09/SCATEData/issues
Depends On Me SCATE
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCATEData_0.99.5.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/SCATEData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCATEData
Package Short Url https://bioconductor.org/packages/SCATEData/
Package Downloads Report Download Stats

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