FunciSNP.data

DOI: 10.18129/B9.bioc.FunciSNP.data    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of FunciSNP.data; for the stable release version, see FunciSNP.data.

Various data sets for use with the FunciSNP package

Bioconductor version: Development (3.12)

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

Citation (from within R, enter citation("FunciSNP.data")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("FunciSNP.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ENCODE, ExperimentData, Project1000genomes, SNPData
Version 1.25.1
License GPL-3
Depends R (>= 2.14.0), IRanges
Imports rtracklayer
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
Depends On Me FunciSNP
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/FunciSNP.data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FunciSNP.data
Package Short Url https://bioconductor.org/packages/FunciSNP.data/
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