## ----mychunk1, cache=TRUE, eval=FALSE, hide=TRUE------------------------------ # library(RareVariantVis) # library(DataRareVariantVis) ## ----mychunk2, cache=TRUE, eval=FALSE, hide=TRUE------------------------------ # sample = system.file("extdata", "CoriellIndex_S1.vcf.gz", # package = "DataRareVariantVis") # sv_sample = system.file("extdata", "CoriellIndex_S1.sv.vcf.gz", # package = "DataRareVariantVis") ## ----mychunk3, cache=TRUE, eval=FALSE, hide=TRUE------------------------------ # chromosomeVis(sample=sample, sv_sample=sv_sample, # chromosomes=c("19")) ## ----mychunk4, cache=TRUE, eval=FALSE, hide=TRUE------------------------------ # rareVariantVis("RareVariants_CoriellIndex_S1.txt", # "RareVariants_CoriellIndex_S1.html", # "CorielIndex") ## ----mychunk5, cache=TRUE, eval=FALSE, hide=TRUE------------------------------ # inputFiles = c("RareVariants_CoriellIndex_S1.txt", # "RareVariants_Coriell_S2.txt") # sampleNames = c("CoriellIndex_S1", "Coriell_S2"); # multipleVis(inputFiles, "CorielSamples.html", sampleNames, "19")